Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g01524 | ATGGAGAACGAGTTCTTTATGAACGATGGATGCGGTTTTTCTGGGATGGAAATTCAACCTAATGAGTTGAATTCGAGTGGGTTGTTTACTCCCAATTGGGAGAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCAATTGTGTCTTCTCCGGTGAATTCTCACGCTGGAAATGTTATCGGCGGTGGCGGTGGAGGTGGAGACAACTTGATGATGCGAGAATTGATCGGAAGGCTTGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAACAATAACAGTACGAACACTTCTTGTTACAACACGCCTTTGAATTCTCCTCCCAAGCTCAATTTGTCTTCGATCGGAGGGAATTTGATTCCCCTTCATCAAAATCTGGCTCCATTTTCGGCTGATCCTGGGTTTACTGAGAGGGCTGCGAGATTTTCTTGCTTTGGGAACAGGAATCTTGCGGGCTTGAATGGCCACTTGAGTTCTAATGAAACCCTAGAATTGGGAGCTGGGATGGAATCTGGAAAGCTATCCAGAGTTTCAAGTAACAAATCCTTCTACATTGGTGGAATTGGATCCCAAATGGGGGTTCAAGAAGGCGAGCAAAGCCCAATCCAGAAGGGGAATTCCATGAGAATCCCTAACAAGAAGGTACTGAACAGGTTTTTGAGGTCTTCGACCCCTGAAAACACCGGCGATTCACCGGAGGGATCGTCGGTTTCCGAACAGATTACAAGTGGGGAATTGGGTTTCAAAGGTAAACCAGAAATCAACACTAGGAAAAGGAAATCAATTCTCACTGGACAAGCAAAAGATTTGAAGGTTGCAGGAGAGAAGCATGAATCAAATGGAAAGAAAATCAAACCAGATGAAGCTTCTAAGAAGGAGATTGATGCTGCAAAAGGGAAGGCAGAGGCCAAAGATGGCTCAAAAGCTTTAGGAGTAGCAAATCCTAAGCAAAAGAATGACAATTCAAAGCCTCCAGAGCCTCCGAAGGATTATATCCATGTCAGAGCTGGAAGGGGTCAAGCAACAGATAGCCACAGTTTGGCTGAAAGAGTCCGACGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCAGTTGCAATAAGGTAACTGGGAAGGCTGTCATGCTTGATGAAATCATAAACTATGTTCAGTCTTTGCAGCGCCAAGTTGAGTTTCTTTCAATGAAATTGACCACTGTCAATCCAAGGATGGATTTGAACATGGAGACCCTTTTGCCAAAGGATATCTTCAAAGGTCCCGGTTCGTCGTCGCTAACGGTTTACCCTATGGATTCATCCATGCCCGCATTTGCATATGACTATCAATCTATGCACATGCCTCCTCTTCATAGTAGCATTTCTAATGGGACAGAGAAGCAATTCTCAGTTGCCTCATCAAGTGATCAGCCAAGAAATCTAAGCGCACAAATACCGAGTGGATACAACGAAGTTGGGAACGGAATCCAAATTTCAAAGTTCTGGGAGGATGAACTCCACACCGTAGTTCAAATGGGTTATGGACAAAACCAGCTGCAGATTTCTAATGGCTCTATGGCTGCAGATGAGATGAAAAGTGAACGGTAA | 1626 | 44.34 | MENEFFMNDGCGFSGMEIQPNELNSSGLFTPNWENSMDQSDLFESTLSSIVSSPVNSHAGNVIGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIGGNLIPLHQNLAPFSADPGFTERAARFSCFGNRNLAGLNGHLSSNETLELGAGMESGKLSRVSSNKSFYIGGIGSQMGVQEGEQSPIQKGNSMRIPNKKVLNRFLRSSTPENTGDSPEGSSVSEQITSGELGFKGKPEINTRKRKSILTGQAKDLKVAGEKHESNGKKIKPDEASKKEIDAAKGKAEAKDGSKALGVANPKQKNDNSKPPEPPKDYIHVRAGRGQATDSHSLAERVRREKISKRMKFLQDLVPSCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLTTVNPRMDLNMETLLPKDIFKGPGSSSLTVYPMDSSMPAFAYDYQSMHMPPLHSSISNGTEKQFSVASSSDQPRNLSAQIPSGYNEVGNGIQISKFWEDELHTVVQMGYGQNQLQISNGSMAADEMKSER | 541 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 11539744 | 11542639 | + | CmaCh14G015240.1 | Cma14g01524 | 308507 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g01524 | 541 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 350 | 400 | IPR011598 | GO:0046983 | |
Cma14g01524 | 541 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 34 | 526 | IPR024097 | GO:0006355 | |
Cma14g01524 | 541 | MobiDBLite | consensus disorder prediction | 203 | 222 | - | - | |
Cma14g01524 | 541 | MobiDBLite | consensus disorder prediction | 203 | 217 | - | - | |
Cma14g01524 | 541 | CDD | bHLH_AtBPE_like | 340 | 425 | - | - | |
Cma14g01524 | 541 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 348 | 419 | IPR036638 | GO:0046983 | |
Cma14g01524 | 541 | MobiDBLite | consensus disorder prediction | 464 | 492 | - | - | |
Cma14g01524 | 541 | MobiDBLite | consensus disorder prediction | 261 | 315 | - | - | |
Cma14g01524 | 541 | MobiDBLite | consensus disorder prediction | 232 | 342 | - | - | |
Cma14g01524 | 541 | SMART | finulus | 356 | 406 | IPR011598 | GO:0046983 | |
Cma14g01524 | 541 | MobiDBLite | consensus disorder prediction | 232 | 253 | - | - | |
Cma14g01524 | 541 | Pfam | Helix-loop-helix DNA-binding domain | 354 | 401 | IPR011598 | GO:0046983 | |
Cma14g01524 | 541 | PANTHER | TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 | 34 | 526 | - | - | |
Cma14g01524 | 541 | Gene3D | - | 347 | 421 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00243 | Cma-Chr8:1373639 | Cma14g01524 | Cma-Chr14:11539744 | 9.27E-82 | dispersed | |
Cma14g01524 | Cma-Chr14:11539744 | Cma17g01290 | Cma-Chr17:8705244 | 1.41E-75 | dispersed | |
Cma18g00297 | Cma-Chr18:1577245 | Cma14g01524 | Cma-Chr14:11539744 | 4.41E-45 | dispersed | |
Cma14g01524 | Cma-Chr14:11539744 | Cma06g01607 | Cma-Chr6:10016680 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36300 | PF00010 | HLH | 1.50E-05 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g01524 | - | - | cmax:111479362 | 1026.54 |