Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01524 ATGGAGAACGAGTTCTTTATGAACGATGGATGCGGTTTTTCTGGGATGGAAATTCAACCTAATGAGTTGAATTCGAGTGGGTTGTTTACTCCCAATTGGGAGAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCAATTGTGTCTTCTCCGGTGAATTCTCACGCTGGAAATGTTATCGGCGGTGGCGGTGGAGGTGGAGACAACTTGATGATGCGAGAATTGATCGGAAGGCTTGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAACAATAACAGTACGAACACTTCTTGTTACAACACGCCTTTGAATTCTCCTCCCAAGCTCAATTTGTCTTCGATCGGAGGGAATTTGATTCCCCTTCATCAAAATCTGGCTCCATTTTCGGCTGATCCTGGGTTTACTGAGAGGGCTGCGAGATTTTCTTGCTTTGGGAACAGGAATCTTGCGGGCTTGAATGGCCACTTGAGTTCTAATGAAACCCTAGAATTGGGAGCTGGGATGGAATCTGGAAAGCTATCCAGAGTTTCAAGTAACAAATCCTTCTACATTGGTGGAATTGGATCCCAAATGGGGGTTCAAGAAGGCGAGCAAAGCCCAATCCAGAAGGGGAATTCCATGAGAATCCCTAACAAGAAGGTACTGAACAGGTTTTTGAGGTCTTCGACCCCTGAAAACACCGGCGATTCACCGGAGGGATCGTCGGTTTCCGAACAGATTACAAGTGGGGAATTGGGTTTCAAAGGTAAACCAGAAATCAACACTAGGAAAAGGAAATCAATTCTCACTGGACAAGCAAAAGATTTGAAGGTTGCAGGAGAGAAGCATGAATCAAATGGAAAGAAAATCAAACCAGATGAAGCTTCTAAGAAGGAGATTGATGCTGCAAAAGGGAAGGCAGAGGCCAAAGATGGCTCAAAAGCTTTAGGAGTAGCAAATCCTAAGCAAAAGAATGACAATTCAAAGCCTCCAGAGCCTCCGAAGGATTATATCCATGTCAGAGCTGGAAGGGGTCAAGCAACAGATAGCCACAGTTTGGCTGAAAGAGTCCGACGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCAGTTGCAATAAGGTAACTGGGAAGGCTGTCATGCTTGATGAAATCATAAACTATGTTCAGTCTTTGCAGCGCCAAGTTGAGTTTCTTTCAATGAAATTGACCACTGTCAATCCAAGGATGGATTTGAACATGGAGACCCTTTTGCCAAAGGATATCTTCAAAGGTCCCGGTTCGTCGTCGCTAACGGTTTACCCTATGGATTCATCCATGCCCGCATTTGCATATGACTATCAATCTATGCACATGCCTCCTCTTCATAGTAGCATTTCTAATGGGACAGAGAAGCAATTCTCAGTTGCCTCATCAAGTGATCAGCCAAGAAATCTAAGCGCACAAATACCGAGTGGATACAACGAAGTTGGGAACGGAATCCAAATTTCAAAGTTCTGGGAGGATGAACTCCACACCGTAGTTCAAATGGGTTATGGACAAAACCAGCTGCAGATTTCTAATGGCTCTATGGCTGCAGATGAGATGAAAAGTGAACGGTAA 1626 44.34 MENEFFMNDGCGFSGMEIQPNELNSSGLFTPNWENSMDQSDLFESTLSSIVSSPVNSHAGNVIGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIGGNLIPLHQNLAPFSADPGFTERAARFSCFGNRNLAGLNGHLSSNETLELGAGMESGKLSRVSSNKSFYIGGIGSQMGVQEGEQSPIQKGNSMRIPNKKVLNRFLRSSTPENTGDSPEGSSVSEQITSGELGFKGKPEINTRKRKSILTGQAKDLKVAGEKHESNGKKIKPDEASKKEIDAAKGKAEAKDGSKALGVANPKQKNDNSKPPEPPKDYIHVRAGRGQATDSHSLAERVRREKISKRMKFLQDLVPSCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLTTVNPRMDLNMETLLPKDIFKGPGSSSLTVYPMDSSMPAFAYDYQSMHMPPLHSSISNGTEKQFSVASSSDQPRNLSAQIPSGYNEVGNGIQISKFWEDELHTVVQMGYGQNQLQISNGSMAADEMKSER 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11539744 11542639 + CmaCh14G015240.1 Cma14g01524 308507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01524 541 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 400 IPR011598 GO:0046983
Cma14g01524 541 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 34 526 IPR024097 GO:0006355
Cma14g01524 541 MobiDBLite consensus disorder prediction 203 222 - -
Cma14g01524 541 MobiDBLite consensus disorder prediction 203 217 - -
Cma14g01524 541 CDD bHLH_AtBPE_like 340 425 - -
Cma14g01524 541 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 419 IPR036638 GO:0046983
Cma14g01524 541 MobiDBLite consensus disorder prediction 464 492 - -
Cma14g01524 541 MobiDBLite consensus disorder prediction 261 315 - -
Cma14g01524 541 MobiDBLite consensus disorder prediction 232 342 - -
Cma14g01524 541 SMART finulus 356 406 IPR011598 GO:0046983
Cma14g01524 541 MobiDBLite consensus disorder prediction 232 253 - -
Cma14g01524 541 Pfam Helix-loop-helix DNA-binding domain 354 401 IPR011598 GO:0046983
Cma14g01524 541 PANTHER TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 34 526 - -
Cma14g01524 541 Gene3D - 347 421 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00243 Cma-Chr8:1373639 Cma14g01524 Cma-Chr14:11539744 9.27E-82 dispersed
Cma14g01524 Cma-Chr14:11539744 Cma17g01290 Cma-Chr17:8705244 1.41E-75 dispersed
Cma18g00297 Cma-Chr18:1577245 Cma14g01524 Cma-Chr14:11539744 4.41E-45 dispersed
Cma14g01524 Cma-Chr14:11539744 Cma06g01607 Cma-Chr6:10016680 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36300 PF00010 HLH 1.50E-05 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01524 - - cmax:111479362 1026.54