Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01560 ATGGCGGCTAAGAAACTCTGTGAGACCTTCTCCAAGAGCCTGATCGACGAGGTTCAGAAATGGGGTTGCATGAAACAGACTGGGGTTAGCTTGAGATACATGATGGAGTTTGGTTTGAAGCCTACTCCCAAGAATTTGCTTATTTCTGCTCAGTTTCTTCACAAGGAGCTTCCAATTCGGATTGCTAGAAGAGCTATTGAACTCGAGAATCTTCCTTATGGCCTCTCTGTTAAACCTGCTGTTTTGAAGGTTCGTGACTGGTATTTGGATTCTTTCCGTGACCTTCGGGCCTTCCCCGAGATAAAGAACCCAGATGATGAAAAGGAGTTTACACAAATGATAAAGGCAATTAAGGTGAGACACAACAACGTGGTTCCGATGATGGCTTTAGGCGTTCAACAGCTGAAGAAGAGCATTGCTCTAGATAATATTGGTTATCAAGATCTTCATGAGATTCATCAGTTTTTGGATCGCTTCTACATGTCGAGAATTGGGATTCGTATGCTCATTGGGCAGCATGTCGAATTACACAACCCCAATCCCCCTCCTGACTGTGTAGGATATATACACACAAAAATGTCCCCTGTGAAGGTCGCGGAGAGCGCCAGTGAGGATGCTCGTGCTATCTGTTTGCGTGAGTATGGCAGTGCCCCTAATATCAAAATCTATGGAGATCCAAGTTTTACATTTCCTTATGTTCCAACGCATTTGCAACTTATGGTCTTTGAGTTGGTTAAGAACTCGTTACGTGCCGTGCAAGAGCGTTTTATGGATTCTGATAAAGTTGCTCCTCCAGTTAAAATTATAGTTGCTGATGGAATTGAGGATGTCACTATTAAGGTATCCGACGAGGGCGGTGGCATACCTCGAAGCGGGCTTCCCAGAATTTTCACCTACCTCTACACCACAGCAAAAAACCCTCTGGACGAACATCCCGATCTGGGAACAGCAGACTTGGTGACAATGGCTGGATATGGTTATGGCCTTCCTATAAGTCGTCTGTATGCCCGTTATTTTGGCGGGGATCTGCAAGTGATTTCCATGGAAGGATATGGAACAGATGCATATCTACACCTATCTCGTCTGGGGGATTCACAAGAGCCACTGCCATGA 1113 45.19 MAAKKLCETFSKSLIDEVQKWGCMKQTGVSLRYMMEFGLKPTPKNLLISAQFLHKELPIRIARRAIELENLPYGLSVKPAVLKVRDWYLDSFRDLRAFPEIKNPDDEKEFTQMIKAIKVRHNNVVPMMALGVQQLKKSIALDNIGYQDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPDCVGYIHTKMSPVKVAESASEDARAICLREYGSAPNIKIYGDPSFTFPYVPTHLQLMVFELVKNSLRAVQERFMDSDKVAPPVKIIVADGIEDVTIKVSDEGGGIPRSGLPRIFTYLYTTAKNPLDEHPDLGTADLVTMAGYGYGLPISRLYARYFGGDLQVISMEGYGTDAYLHLSRLGDSQEPLP 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11719833 11723180 - CmaCh14G015600.1 Cma14g01560 308543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01560 370 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 190 359 IPR036890 -
Cma14g01560 370 SUPERFAMILY alpha-ketoacid dehydrogenase kinase, N-terminal domain 16 180 IPR036784 -
Cma14g01560 370 PANTHER BNAA05G30880D PROTEIN 10 370 - -
Cma14g01560 370 SMART HKATPase_4 232 363 IPR003594 -
Cma14g01560 370 CDD HATPase_PDK-like 194 360 - -
Cma14g01560 370 Gene3D - 5 182 IPR036784 -
Cma14g01560 370 PANTHER PYRUVATE DEHYDROGENASE KINASE 10 370 IPR039028 GO:0004672
Cma14g01560 370 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 360 IPR003594 -
Cma14g01560 370 ProSiteProfiles Histidine kinase domain profile. 234 363 IPR005467 -
Cma14g01560 370 Gene3D - 192 369 IPR036890 -
Cma14g01560 370 Pfam Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 28 190 IPR018955 -
Cma14g01560 370 PRINTS Bacterial sensor protein C-terminal signature 277 291 IPR004358 GO:0016310|GO:0016772
Cma14g01560 370 PRINTS Bacterial sensor protein C-terminal signature 323 341 IPR004358 GO:0016310|GO:0016772
Cma14g01560 370 PRINTS Bacterial sensor protein C-terminal signature 347 360 IPR004358 GO:0016310|GO:0016772
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01560 K00898 PDK2_3_4; pyruvate dehydrogenase kinase 2/3/4 [EC:2.7.11.2] - csv:101213546 722.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g256 . Blo12g00373 Bda03g00837 . Bpe04g00792 . Bma04g00735 . . . . Cma14g01560 . Car14g01375 . . Cpe03g01304 Bhi01g01126 Tan10g1120 . . Hepe05g1346 . . . . . . . . . Cone14ag0680 Cone15ag0692 . . Lsi05g01389 . . Cme06g00829 . . . . . . . . . . Cmo14g01595 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003282 1 3 1 1 1 2 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 1 1 1 1 2 1 2 3 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01560 Cma_Chr14 FPKM 26.042175 26.804586 40.680649 46.786354 39.920593 36.922855 43.348579 26.812595 24.573311 25.227425