Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01565 ATGGCTGAGAACAGGAGATATGTTCCCATTCAGCATTTAGATCTGGTACAAATACTACAAGAAGCACAAAATAGGTGGCTTCGGCCAGCTGAAATATGTGAAATTCTTCGAAATTACCAAAAGTTTCAATTAGCACCGGATCCTCCAGTTCAGCCTCCAGCTGGATCCTTGTTCCTTTTTGATCGGAAAGCACTTAGATATTTTCGTAAAGATGGTCATAAATGGAGGAAGAAGAAAGATGGAAAAACTGTCAAAGAAGCCCATGAAAAGTTGAAGAGTGGAAGTGTGGATGTTCTGCATTGTTACTATGCACATGGTGAGGACAATGACAACTTCCAGCGAAGAAGTTATTGGATGCTTGATGAGCAATTAGAGCATATTGTCCTTGTGCATTACAGAGAAGTAAATGAGGGGCACAGGTCTGGCGTATCTCGTGTGTCAGTTGATCCAGGGTCATTGGCTGAAGGTTGTCAAGGAGGCTCAACACCCATCTTTATGCAGGAAACTTCACTTGTTGGCTCAGTTCATACTTCAAGTCCATTAAGTCCTATGCAAACAGTGCGTTCAGAAAATGGGGGTGTGGATTCTAGCGCTAGGAATGACTCTGGAATCTCTTCTGATGATCATCATGTGTTTAAATCCAGCATGCTGCCTGCATCTTTGCCTGCAGGTGATGTTTCAGGATCGTCTGATTTGTGTGGACAAGAAATCGTGATTATTCAATCTGCCATAACTGATTCCATTACACATAAGTTAATAGATGCAAGATTGGCTTCTAGTGGCTTAGTAAAAAATATGGTAAACAGTGGGCATGGCTTGATTGCTGATGCAGAAGTACCTGCCGCAAAAGCAGTTTCTCAGAGAATTGTTCAGTGCCCAACGCTGTATTTCATGTGTCAGAAAAAGAAGCACGGTTTGATCACAGTTCCTCTATTTGGTATGTGTACTGATTCTCAGGTGGTAGACGACTCGTTTGTTCAGGTAGAAAAGACATCCAAATATGATTTGAACCATGAAGGTTTTGGAGAACTCAAAAAACTTGACAGTTTTGGCAGATGGATGGATAAGGAAATTGGAAGAGATTGTGATGATTCTTTGATGACTTTGGACTCTGGTAATTACTGGTGTGCACTGGATGCTGGAAATGATGAGAAGGAAGTATCCAGTTTATCGCATCACATGCAGCTGGATATTGATTCACTGGGACCTTCACTTTCCCAAGATCAGCTATTCAGTATTTCCGATTTTTCCCCAGATTGGGCATATTCTGGAAATGTAACAAAGGTCCTAATAGTTGGCTCGTTTTTGGGAAGCAAAAAACTTCCTGTAGAAACGCAGTGGGGATGCATGTTTGGGGAAGTTGAGGTTTCTGCAGAAATTCTGTCAAACAGTGTACTTCGATGCCAAACTCCCCTGCATGCTCCAGGGCGTATTCCCTTCTATGTGACATGCTGTAATAGGCTAGCCTGCAGTGAGGTGAGAGAGTTTGAGTTTCGTGAAAAGCCACCAACCCTTTCTGTACCTAATGCTATCAAGTGTGCATCAGAAGATGAATTACGGTTTCAAATGCGTCTGACAAGGCTGTTGAATTTATGTTTAGAGGAAAAGTGGTTGGATTGCTCTATTAAAAACTGTGAGAAATGCAAAATCATAGGTTTGATAAAGTCATCCAGAAGTAATATTGCAAAATGGAGAATGATGGAAGGGATTTCTATTCCATTAATAAGTGATGGAATGAACCCTAGGGATTTTATAATCCAATCTTTGCTGGTGGATAAACTTTGTGAGTGGCTAGCATGCAAGGTTCATGAAGGAACTATGGGAACGCATGTTTTGGATGAGGAGGGCCTAGGCGTCATACATTTGGCAGCTGCACTTGGCTATGCATGGACCATAGGACCGATAATTGCTTCTGGGGTCAGTCCGAACTTCAGAGATTCGAAGGGAAGGACAGCTCTTCACTGGGCGTCTTACTTTGGGAGGGAAGAAACCGTCGCTACACTGGTTAGGTTAGGTGTTTCTCCTGGTGCCGTGGATGATCCAACTTCAGGATTTCCAGGAGGACAAACTGCTGCTGATTTGGCATCAAGTCAAGGGCATAAGGGAATTGCTGGATATTTGGCTGAAGCTGATCTTACAGCTCATTTACGTTCTTTGACTGATGGTGAAAATCTTAAGGACAACGTCAAAGAAAATGTTAACGTTGATGAAACTATTCAGACTGCAGATGTCGTATCATCGCAGTTGGCGGAAGACGAACTCCTTTCCCTCAAGGGTTCTCTCGCTGCTGTCAGGAAGTCTGTTCACGCTGCTGCCTTAATTCATGCTGCTTTCCGTGCTCGTTCATTTCGTCAAAAACAATTAATGGGAAGTGACAAGGAGATGATACATGAAGAATCAGTTGACTTAGTGGCTCTCGGAATTTTACACAAGGCTGAAAAAATTCACTATGAGGATTATCTCCACGTCGCAGCTGTGAGGATTCAACAAAATTATCGTGGCTGGAAGGGAAGAAAAGAGTTTTTGAAGATAAGAAACCGAATTGTAAAAATCCAGGCTCATGTGAGAGGACATCAAGTTCGTAAACTGTATAGAAAGGTCATATGGACAGTTAGCATTGTAGAAAAGGCAATTCTACGCTGGAGGCGGAAAAGAGTTGGTCTGCGAGGGTTCAAAGCCGAAGGGGCAACTGGAGAAGTTGCTTCCTCGCATTCACAGGTGGAGAAAAGTGATGAATATGAGTTTCTACGAATTGGGCGCCAGCTTAAATATGCTGATGTTGAAAAGGCGCTATCCAGAGTCAAGTCCATGGCTCGTTCGCCCGAGGCTCGCCATCAGTATATGAGATTAGTAACAAAGTTTCACATTTTTAAGATTAATGATGAAGAATGA 2892 42.67 MAENRRYVPIQHLDLVQILQEAQNRWLRPAEICEILRNYQKFQLAPDPPVQPPAGSLFLFDRKALRYFRKDGHKWRKKKDGKTVKEAHEKLKSGSVDVLHCYYAHGEDNDNFQRRSYWMLDEQLEHIVLVHYREVNEGHRSGVSRVSVDPGSLAEGCQGGSTPIFMQETSLVGSVHTSSPLSPMQTVRSENGGVDSSARNDSGISSDDHHVFKSSMLPASLPAGDVSGSSDLCGQEIVIIQSAITDSITHKLIDARLASSGLVKNMVNSGHGLIADAEVPAAKAVSQRIVQCPTLYFMCQKKKHGLITVPLFGMCTDSQVVDDSFVQVEKTSKYDLNHEGFGELKKLDSFGRWMDKEIGRDCDDSLMTLDSGNYWCALDAGNDEKEVSSLSHHMQLDIDSLGPSLSQDQLFSISDFSPDWAYSGNVTKVLIVGSFLGSKKLPVETQWGCMFGEVEVSAEILSNSVLRCQTPLHAPGRIPFYVTCCNRLACSEVREFEFREKPPTLSVPNAIKCASEDELRFQMRLTRLLNLCLEEKWLDCSIKNCEKCKIIGLIKSSRSNIAKWRMMEGISIPLISDGMNPRDFIIQSLLVDKLCEWLACKVHEGTMGTHVLDEEGLGVIHLAAALGYAWTIGPIIASGVSPNFRDSKGRTALHWASYFGREETVATLVRLGVSPGAVDDPTSGFPGGQTAADLASSQGHKGIAGYLAEADLTAHLRSLTDGENLKDNVKENVNVDETIQTADVVSSQLAEDELLSLKGSLAAVRKSVHAAALIHAAFRARSFRQKQLMGSDKEMIHEESVDLVALGILHKAEKIHYEDYLHVAAVRIQQNYRGWKGRKEFLKIRNRIVKIQAHVRGHQVRKLYRKVIWTVSIVEKAILRWRRKRVGLRGFKAEGATGEVASSHSQVEKSDEYEFLRIGRQLKYADVEKALSRVKSMARSPEARHQYMRLVTKFHIFKINDEE 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11743952 11753790 + CmaCh14G015650.1 Cma14g01565 308548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01565 963 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cma14g01565 963 SUPERFAMILY Ankyrin repeat 610 710 IPR036770 -
Cma14g01565 963 Gene3D - 590 721 IPR036770 -
Cma14g01565 963 Pfam IQ calmodulin-binding motif 823 841 IPR000048 GO:0005515
Cma14g01565 963 Pfam IQ calmodulin-binding motif 847 865 IPR000048 GO:0005515
Cma14g01565 963 ProSiteProfiles Ankyrin repeat region circular profile. 648 680 - -
Cma14g01565 963 Pfam IPT/TIG domain 412 491 IPR002909 -
Cma14g01565 963 MobiDBLite consensus disorder prediction 175 203 - -
Cma14g01565 963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 810 871 IPR027417 -
Cma14g01565 963 MobiDBLite consensus disorder prediction 175 201 - -
Cma14g01565 963 ProSiteProfiles Ankyrin repeat profile. 648 680 IPR002110 GO:0005515
Cma14g01565 963 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cma14g01565 963 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 951 - -
Cma14g01565 963 SMART ANK_2a 687 716 IPR002110 GO:0005515
Cma14g01565 963 SMART ANK_2a 648 677 IPR002110 GO:0005515
Cma14g01565 963 SUPERFAMILY E set domains 413 499 IPR014756 -
Cma14g01565 963 SMART iq_5 820 842 IPR000048 GO:0005515
Cma14g01565 963 SMART iq_5 843 865 IPR000048 GO:0005515
Cma14g01565 963 ProSiteProfiles IQ motif profile. 821 850 IPR000048 GO:0005515
Cma14g01565 963 Gene3D Immunoglobulins 406 504 IPR013783 -
Cma14g01565 963 Pfam Ankyrin repeats (many copies) 649 707 IPR002110 GO:0005515
Cma14g01565 963 ProSiteProfiles IQ motif profile. 844 872 IPR000048 GO:0005515
Cma14g01565 963 Gene3D - 819 868 - -
Cma14g01565 963 SMART CG_1_2 18 136 IPR005559 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01565 K21596 CAMTA; calmodulin-binding transcription activator - csv:101219268 1490.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01266 Cma14g01565 CCT
Cma14g01565 Cma17g00358 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01266 Cma-Chr8:7703562 Cma14g01565 Cma-Chr14:11743952 9.89E-141 dispersed
Cma14g01565 Cma-Chr14:11743952 Cma16g00713 Cma-Chr16:3713192 2.22E-56 dispersed
Cma14g01565 Cma-Chr14:11743952 Cma19g00254 Cma-Chr19:1804145 1.38E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g245 . . . . . . . . Cmo08g01236 Cmo17g00349 . Cma14g01565 . Car14g01381 . . Cpe03g01309 . . . . . . . . . . . . . . Cone14ag0685 Cone15ag0697 . . . . Chy11g01557 . . . . . . . . . . . Cmo14g01600 Cma08g01266 Cma17g00358 . Car17g00331 . . . . . . . . . . . . . . . . . . . Cme11g02068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007961 0 8 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36301 PF03859 CG-1 4.50E-49 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01565 Cma_Chr14 FPKM 4.183648 4.808136 1.651063 1.046821 1.009951 1.057048 0.967314 1.911267 1.995407 2.475145