Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01567 ATGAACTCCATGGCGTCGCTACCTCTTTCCGCCGTCTCCGGCCACCGGAATCTCACATTTCCATGCCTCCTACTCCTCCTACTACCAGCAACACTACTTTTACCTCCTCTCACTTTCGCCTCACCTTGCCGGACCTCCTGCGGCAACATTCCGATCAAATACCCCTTCGGAGTTGATGACGGCTGCGGAGCGCCTCAGTTCCGGCGCATGTTCAATTGCTCCACAGATCTCTTCTTCCTCACTCCCTCCGGCACTTACAAAGTCCAATCCATCGATTACGACAAGCAATCCATGGTGATCTACGATCCGGCCATGTCGACCTGCTCCATCCTTCAACCGCATCACGACTTCGTCATGACCGATATCCAATCGATCATCATGCCGCCGACGCCGGACACCGTGTTCGCTCTCCTCAATTGCTCGATCGATTCACCGATCCTCAACCACTACAAGTACCTCTGCTTCAACTTCTCTGGCCATTCCTGCGACGAACTCTACGGCGCCTGCAACGCCTTCCGAGTCTTCCATCTGTTGACGAACAGTTCGCCTCCGTGCTGTTTCACTGGATACGATACTGTAAAGTTCATGAGTATGAACATTCTGGATTGCTCGCATTACACGACGGTGTTGAATTCGGAGAATCTGAAGGGCGTAGGGGCTCTGGATTGGGATTACGGGATGAAATTGAGCTTCTCTGTTCCGGATTTAGGATGCGATCGGTGTTCAAAATCGGGAGGAACTTGTGGATTTGATACTGAAACCGAAGGATTGTCGTGCCTTTGCTCCATTTCCTCTAATCATACCAGAGATTGCGTTGGTGGAAATATTACGAGTGGAGGGCCACACGAAGCATCCTCACTGATTTTAAGCTATTATTGA 879 50.97 MNSMASLPLSAVSGHRNLTFPCLLLLLLPATLLLPPLTFASPCRTSCGNIPIKYPFGVDDGCGAPQFRRMFNCSTDLFFLTPSGTYKVQSIDYDKQSMVIYDPAMSTCSILQPHHDFVMTDIQSIIMPPTPDTVFALLNCSIDSPILNHYKYLCFNFSGHSCDELYGACNAFRVFHLLTNSSPPCCFTGYDTVKFMSMNILDCSHYTTVLNSENLKGVGALDWDYGMKLSFSVPDLGCDRCSKSGGTCGFDTETEGLSCLCSISSNHTRDCVGGNITSGGPHEASSLILSYY 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11754473 11755917 - CmaCh14G015670.1 Cma14g01567 308550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01567 292 PANTHER WALL-ASSOCIATED RECEPTOR KINASE CARBOXY-TERMINAL PROTEIN 24 286 - -
Cma14g01567 292 Pfam Wall-associated receptor kinase C-terminal 226 262 IPR032872 -
Cma14g01567 292 Pfam Wall-associated receptor kinase galacturonan-binding 43 102 IPR025287 GO:0030247
Cma14g01567 292 PANTHER WALL-ASSOCIATED RECEPTOR KINASE CARBOXY-TERMINAL PROTEIN-RELATED 24 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01567 - - - cmo:103483914 527.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00325 Cma-Chr7:1422125 Cma14g01567 Cma-Chr14:11754473 3.53E-22 dispersed
Cma13g00756 Cma-Chr13:6597665 Cma14g01567 Cma-Chr14:11754473 1.09E-26 dispersed
Cma14g01567 Cma-Chr14:11754473 Cma18g00177 Cma-Chr18:893905 2.76E-39 dispersed
Cma14g01567 Cma-Chr14:11754473 Cma13g00880 Cma-Chr13:7139943 7.46E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g243 . . . . . . . . . . . Cma14g01567 . Car14g01382 Sed12g0749 . Cpe03g01310 Bhi01g01120 Tan10g1106 Cmetu06g0325 . Hepe05g1352 . . . . . . . . . . . . . Lsi05g01393 . . Cme06g00824 . . . . . . . . . . Cmo14g01602 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013850 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01567 Cma_Chr14 FPKM 1.659283 2.496039 0.0 0.0 5.029568 6.334316 4.092751 1.272644 1.804479 1.808099