Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01569 ATGGCTCTCGACGCCGAAGCTGTACCAGCGGCGGAGTTGGCGCTTGCTGATACCGACATCAACTGGAACAGGTTGGACAAGACAAAGTTTCATATAATTGGAGCAATTCTCTTTACTGCTCAGTCAGCCTTGTTACATCCAACAGCGGTTGTAAAAACTAGAATGCAAGTTGCTGGATCTGGTCTGTCTCACATGCGTGGACTGTCAGTTTTCTGGAATATATTGAAGTCTGATGGAATCTCTGGCTTATATAGAGGTTTTGGTACTTCAGCGGTTGGTTCATTACCTGGTAGGGTACTGGCTTTAACATCACTGGAAGTATCGAAAGACATAATGTTGAAATATACTGGAAGTCTGCAAATGCCCGAAGCAACTCGTGTTGGTCTTGCTAATGGAGTGGCAGGCATGATCTCAAATTTGGTTTCATGCATATACTTTGTGCCGTTGGACGTGACTTGTCAGAGGATGATGGTTCAAGGGCTACCTGGAACCACCTTCTGCAATGGGCCACTTGATGTTGTGAGAAAAGTGGTGAAAGCTGAAGGATTTCGTGGTTTATATAGGGGTTTTGGATTAACGGCTGTATCTCAATCCCCAGCATCTGCTCTCTGGTGGGGTGTCTATGGTGCTGCTCAGCATATCATATGGAGGAGCTTAGGATATCGAGATAGCATGGAGAAGAAACCTTCTCACATGGAGATGGTTACTGTTCAGGCTACAGCTGGAATGGCGGCAGGTGCTTGTTCGTCTATTATTACAACTCCTCTAGACACAGTAAAGACACGACTTCAGGTCATGGATAACTATGGAATTGGAAGACCATCTGTGCTCAAGACATCAAGAGCACTCTTCAAGGAAGATGGATGGTTGGGGTTTTATAGAGGCTTTGGACCTCGGTTTTTGAATATGTCACTTTATGGAACCACGATGATAGTCACATACGAACTGATCAAGAGACTTTCCTTAAAGGAGATCGTGACATCTTGA 987 44.88 MALDAEAVPAAELALADTDINWNRLDKTKFHIIGAILFTAQSALLHPTAVVKTRMQVAGSGLSHMRGLSVFWNILKSDGISGLYRGFGTSAVGSLPGRVLALTSLEVSKDIMLKYTGSLQMPEATRVGLANGVAGMISNLVSCIYFVPLDVTCQRMMVQGLPGTTFCNGPLDVVRKVVKAEGFRGLYRGFGLTAVSQSPASALWWGVYGAAQHIIWRSLGYRDSMEKKPSHMEMVTVQATAGMAAGACSSIITTPLDTVKTRLQVMDNYGIGRPSVLKTSRALFKEDGWLGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSLKEIVTS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11759598 11762444 - CmaCh14G015690.1 Cma14g01569 308552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01569 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 214 IPR018108 -
Cma14g01569 328 Pfam Mitochondrial carrier protein 237 323 IPR018108 -
Cma14g01569 328 Pfam Mitochondrial carrier protein 32 115 IPR018108 -
Cma14g01569 328 Pfam Mitochondrial carrier protein 130 216 IPR018108 -
Cma14g01569 328 PANTHER OS01G0329400 PROTEIN 1 323 - -
Cma14g01569 328 Gene3D Mitochondrial carrier domain 123 325 IPR023395 -
Cma14g01569 328 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 323 - -
Cma14g01569 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 111 IPR018108 -
Cma14g01569 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 320 IPR018108 -
Cma14g01569 328 SUPERFAMILY Mitochondrial carrier 23 316 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01569 K15121 SLC25A44; solute carrier family 25, member 44 - csv:101213375 608.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01569 Cma-Chr14:11759598 Cma17g00701 Cma-Chr17:5800205 9.51E-73 dispersed
Cma14g01569 Cma-Chr14:11759598 Cma15g00225 Cma-Chr15:1120065 8.86E-110 transposed
Cma14g01569 Cma-Chr14:11759598 Cma04g02808 Cma-Chr4:18795033 9.77E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g230 . . . . . . . . . . . Cma14g01569 . Car14g01383 . . Cpe03g01311 Bhi01g01116 . . . . . . . . . . . . . . Cone15ag0699 . . Lsi05g01397 . . Cme06g00821 . . . . . . . . . . Cmo14g01603 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002174 2 4 1 1 1 2 3 2 2 2 2 1 4 2 2 3 2 3 3 1 2 2 2 2 2 2 2 2 3 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01569 Cma_Chr14 FPKM 1.138365 1.40891 3.356933 3.490662 1.280727 0.959684 1.491628 16.40551 14.274965 14.941904