Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01570 ATGGAAACTGGAGAGTCTGCTCCCCCTTCCCTTGGTCCTCGCTATGCACCGGACGACCCTACTCTTCCCAAACCCTGGAAGGGATTGATTGATGGGAGCACTGGACTGTTATACTACTGGAACCCTGAAACTAACGTAACTCAGTATGAAAAACCGGTCTCTTTGCCACCACCATTGCCGCTCGGTCCTCATCCTGGCGTCTCTTCTTCCAATCCTACTTCAGTTTCGGAGGCTCATTCAATGCCATCGAATGGTGCATTAACACCGCATGTACAGAAAAATCATCATGTCCCTCAACAAGAGGGCCAATCAAATAGCCAACTTTCTCAACAACCTGGACATCTTATGTCACAACAGCACAGTTCTGTTGCCGGTCAGGCAACTGTTAATCACCATCCTGGCTTGCAAATGGCACCAGATGGGCGACAAAATAGCTCGCAATCGAACCAGGTCATGCAGCAACAGGGGCTGTTTGCAATGTCGTCACCACATCTTGGCCAGCAGCAGGTCATGCATCAAGGTCAGAAAATGGCACATGCAAATCCACAAATGTCTCAGCATCCAAATCAGCAACCCCCGCAGAATCCAGGACAACCCTTACAGAATCCAGGACAACAAATACCACAACCATCAATCCAGCATTTAGGACAACCAAGCATGCAAAATCAAACGCCATTAGTTGGGCAGCCTCAAGGTCCGCAACCACAATATGGTCAGCAGCAGCTTCAGTATATCGGCTACCAGCAAAGTGTGCATCCAAGTGTGCAGCACAATTTGAAGCAGCAAGTTCAACAAAGCCCTTTAGGTCAACCATTTGGCAATCACCTTGAGCAGAAGTCAGCTTTTCTGAAGAGAGAGGAGGATAATATCCAGTCAGGAAACCAAGTTGGCTTTTCTTCTTCCCAGTTTGAACAAAGTGGTGGTACCTCATCTATTCATAACCTTCATCCTGGAACCAATTCTTCTCAAATGCAATTTGGTTCAGCATCAGACCAAGCACGACAATTTGTTGGCTCTCCAGGAAACATACAACAGCAGAATCCTGTGGTTCAATTGCAGCATGCAGGTACTGAATTGGCTCATCGCCAACATCATTCTAGATTCCAAGATCAGATGAGCCCAGCAGTGATGCAGGGGCAGCAAACTAGTGCTGAAAATTTGCCAGGTAGAGCTGGAAACGAATATTACTTTGGCAGGAATGAAGGGCCTGGCGTTGGTCCACTTCAACCAAGGCTTGCAGCAATACCAATGGCAAGGAGCCAGCAGGACACAAGGATGAGTGGTGTCTCATTTCCAACTGCAGCACCTGGCCATCCTAGTGGGACCAATTTTGCTGCTGGGCATTCACATAATATGTACAGCCATGGATCTGGTGGCCCACCATTGTCAAACAATGCTTTGATAGGCCCTCCTCATATTGGAGCTTCAGATGTCACTAATATGTCACCTGTTGAAGTTTATCGTCAACAGCATGAAGTAACTGCTACGGGTGATAACGTTCCATCTCCTTACATGACATTTGAGGCTACTGGCTTCCCTCCGGAGATACTGAGAGAGATATATTCTGCTGGTTTCTCTTCTCCAACGCCAATTCAAGCACAAACATGGCCAATTGCCCTGCAAGGTCGGGACATAGTTGCCATTGCTAAAACGGGGTCCGGAAAAACTTTGGGCTATTTGATTCCTGCCTTCATGCTTCTTAGGCAGTGCCGGAATAACCCTCAAAATGGACCAACGGTGTTGGTTTTGGCTCCTACTAGGGAGCTTGCTACTCAAATACAAGATGAAGCTATTAAATTTGGGAGGTCTTCCAGGGTTTGTTGTACGTGTTTGTATGGTGGAGCCCCAAAAGGTCCTCAGCTAAAGGAGTTAGAACGTGGTGCTGATATTGTTGTGGCAACTCCTGGCCGGCTCAATGATATACTTGAAATGAAGATGATTAAGTTTAGGCAAATTTCACTTCTTGTGCTTGATGAAGCTGATCGAATGCTTGACATGGGATTTGAACCCCAAATTAGAAAGATTGTGAATGAAATACCACCTCGCAGACAAACACTTATGTATACAGCAACATGGCCCAAGGAAGTAAGAAAAATAGCGAATGATCTTCTAGTCAATTCTGTCCAGGTGAATATTGGTAGCGTTGATGAACTTGCTGCTAACAAGGCTATAACTCAGTATGTTGAAGTCGTTCCACAGATGGAAAAACAGAGACGGTTAGAACAGATTCTTAGGTCCCAAGAACGGGGATCTAAGGTAATAATTTTTTGTTCCACGAAGAGGCTATGTGATCAGCTTGCACGAAGTCTTGGTCGTGGTTTTGGGGCTGCTGCAATTCATGGAGACAAATCGCAGGGGGAGCGTGATTGGGTATTGAACCAGTTTCGTAGTGGAAAGTCCCCAATACTAGTTGCCACAGATGTTGCTGCCCGTGGGCTTGACATCAAAGATATAAGAGTGGTGATCAACTATGATTTTCCAACTGGAGTTGAGGACTATGTCCATCGAATTGGGAGAACTGGGAGGGCTGGAGCAACGGGAGTGGCATATACCTTCTTCACCGAACAGGATTGGAAATATGCTGCTGATTTGATTAAACTACTGGAGGGTGCGGATCAGCATGTGCCTCCTGAGTTGCGAGATATGGCTATGCGTGGTGGGCCAAGTTTTGGGAAGGATAGGGGTGGGATGGGTCGTTTTGATGCAGTTATGGGCGGCAGTCGCTGGGATTCAGGAGGCCGGGGTGGCATGAGAGATGGTGGGTTTGGTGGTCGCGGTGGTGCAAGGGATGGTGGGTTTTGTGGCCGTGGTGGGATGAGAGATGGTGGGTTTGGTGGTCGTGGTAACATGAGGGATGGTACTGCTGGTGGACGAGGTGGGAGAGGTGATTTCTTTTCTACACGGGGTAGAGGACGGGGTTTCGGTGGCCCTGCTGGAGGTCATGTTGGTTGGGGAAGGGGTGATCGTGGCGGGCCACATGATAGGTTCAGTAGTGTGGATGGTCGTGGACGTGGGCGTGGACAGAGTCGATTCGATAATAGAAACGACTTCAGTAATAGGAGTAGAGGCAGAAGTTACAGCCGCAGTCCTGAAAGAGTCCGAACATGGGGTTACAGTCGAAGTCGAAGTCGCAGTGGTAGCCGTAGTCGTAGTAGTAGAAGCTGGAGTAGAAGCCGTAGCAGGAGTAGGAGCAGGAGTCGGAGTTGGTCCCGCCGTCACAGCCGAAGCCGTAGTCGTAGTCGTAGCCGTAGCCACGATAATTACGGGCGTTCGGCTGCAATGTCTCATGGCACACGAAAGAGCGGTTTTGACGATAGAGGTGATGCGGGGCAGGTTCCTCCTGTGGCGGCCAGCAGTAATATCGAGCCAGGGAAACCTGAAAATGGTGCAGAAGATACGAGTGATGGAATTGTTAATGCAGCAGCTCAAGGAATATGA 3438 48.49 METGESAPPSLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPVSLPPPLPLGPHPGVSSSNPTSVSEAHSMPSNGALTPHVQKNHHVPQQEGQSNSQLSQQPGHLMSQQHSSVAGQATVNHHPGLQMAPDGRQNSSQSNQVMQQQGLFAMSSPHLGQQQVMHQGQKMAHANPQMSQHPNQQPPQNPGQPLQNPGQQIPQPSIQHLGQPSMQNQTPLVGQPQGPQPQYGQQQLQYIGYQQSVHPSVQHNLKQQVQQSPLGQPFGNHLEQKSAFLKREEDNIQSGNQVGFSSSQFEQSGGTSSIHNLHPGTNSSQMQFGSASDQARQFVGSPGNIQQQNPVVQLQHAGTELAHRQHHSRFQDQMSPAVMQGQQTSAENLPGRAGNEYYFGRNEGPGVGPLQPRLAAIPMARSQQDTRMSGVSFPTAAPGHPSGTNFAAGHSHNMYSHGSGGPPLSNNALIGPPHIGASDVTNMSPVEVYRQQHEVTATGDNVPSPYMTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFMLLRQCRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRSSRVCCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIKFRQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVNSVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSLGRGFGAAAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFTEQDWKYAADLIKLLEGADQHVPPELRDMAMRGGPSFGKDRGGMGRFDAVMGGSRWDSGGRGGMRDGGFGGRGGARDGGFCGRGGMRDGGFGGRGNMRDGTAGGRGGRGDFFSTRGRGRGFGGPAGGHVGWGRGDRGGPHDRFSSVDGRGRGRGQSRFDNRNDFSNRSRGRSYSRSPERVRTWGYSRSRSRSGSRSRSSRSWSRSRSRSRSRSRSWSRRHSRSRSRSRSRSHDNYGRSAAMSHGTRKSGFDDRGDAGQVPPVAASSNIEPGKPENGAEDTSDGIVNAAAQGI 1145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11765231 11771724 + CmaCh14G015700.1 Cma14g01570 308553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01570 1145 MobiDBLite consensus disorder prediction 165 238 - -
Cma14g01570 1145 Gene3D - 479 713 IPR027417 -
Cma14g01570 1145 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 656 664 IPR000629 -
Cma14g01570 1145 SMART helicmild6 760 844 IPR001650 -
Cma14g01570 1145 Pfam Helicase conserved C-terminal domain 736 844 IPR001650 -
Cma14g01570 1145 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 505 533 IPR014014 GO:0003724
Cma14g01570 1145 CDD WW 23 53 IPR001202 GO:0005515
Cma14g01570 1145 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 308 982 - -
Cma14g01570 1145 MobiDBLite consensus disorder prediction 1 28 - -
Cma14g01570 1145 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 308 982 - -
Cma14g01570 1145 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 536 710 IPR014001 -
Cma14g01570 1145 MobiDBLite consensus disorder prediction 66 129 - -
Cma14g01570 1145 MobiDBLite consensus disorder prediction 941 1145 - -
Cma14g01570 1145 SMART ww_5 21 54 IPR001202 GO:0005515
Cma14g01570 1145 MobiDBLite consensus disorder prediction 200 238 - -
Cma14g01570 1145 Pfam DEAD/DEAH box helicase 529 699 IPR011545 GO:0003676|GO:0005524
Cma14g01570 1145 MobiDBLite consensus disorder prediction 1032 1053 - -
Cma14g01570 1145 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Cma14g01570 1145 CDD SF2_C_DEAD 724 853 - -
Cma14g01570 1145 MobiDBLite consensus disorder prediction 987 1029 - -
Cma14g01570 1145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 861 IPR027417 -
Cma14g01570 1145 MobiDBLite consensus disorder prediction 1054 1080 - -
Cma14g01570 1145 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 739 883 IPR001650 -
Cma14g01570 1145 Gene3D - 714 886 IPR027417 -
Cma14g01570 1145 Gene3D - 16 54 - -
Cma14g01570 1145 Pfam WW domain 22 52 IPR001202 GO:0005515
Cma14g01570 1145 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Cma14g01570 1145 SUPERFAMILY WW domain 17 53 IPR036020 GO:0005515
Cma14g01570 1145 SMART ultradead3 524 727 IPR014001 -
Cma14g01570 1145 MobiDBLite consensus disorder prediction 165 191 - -
Cma14g01570 1145 MobiDBLite consensus disorder prediction 49 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01570 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:101206347 1650.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01443 Cma-Chr11:9505857 Cma14g01570 Cma-Chr14:11765231 5.88E-18 dispersed
Cma14g01266 Cma-Chr14:10033868 Cma14g01570 Cma-Chr14:11765231 2.31E-161 dispersed
Cma14g01570 Cma-Chr14:11765231 Cma14g00662 Cma-Chr14:3304316 7.03E-19 dispersed
Cma15g01392 Cma-Chr15:8717033 Cma14g01570 Cma-Chr14:11765231 6.31E-64 dispersed
Cma15g00484 Cma-Chr15:2163975 Cma14g01570 Cma-Chr14:11765231 4.59E-15 transposed
Cma08g00124 Cma-Chr8:647170 Cma14g01570 Cma-Chr14:11765231 8.30E-52 transposed
Cma14g01570 Cma-Chr14:11765231 Cma06g01580 Cma-Chr6:9883045 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g228 . . . . . . . . . . . Cma14g01570 . Car14g01384 . Cpe08g00137 Cpe03g01312 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01604 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003909 1 2 1 1 1 1 2 1 2 1 2 2 2 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01570 Cma_Chr14 FPKM 17.222281 19.676334 16.185207 17.368181 23.278166 25.637184 23.154261 20.112885 18.109911 18.09236