Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01573 ATGGAGGAACCGAAAGGCATTGTGAAGCACATTTTGCTGGCGAAATTCAAAGATGGAATCACAGAGGAACAAATCGACCAACTCATCAAGGGATATGCCAATCTCGTCAATCTCATTGAACCTATGAAGGCTTTCCAGTGCGGCAAGGATGTTAGCATTGAAAATCTACACCAAGGTTTCACTCACGTCTTTGAATCCACATTTGAGAGTACAGAAGGCATAGCAGAATATGTATCTCATCCAGCGCATGTGGAATTCGCAAATTTGTTCCTTGCATCCTTGGACAAAGTTATCGTCATCGACTACAAAGCGACCATAATTCATAGCTAA 330 42.12 MEEPKGIVKHILLAKFKDGITEEQIDQLIKGYANLVNLIEPMKAFQCGKDVSIENLHQGFTHVFESTFESTEGIAEYVSHPAHVEFANLFLASLDKVIVIDYKATIIHS 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11842205 11845344 + CmaCh14G015730.1 Cma14g01573 308556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01573 109 Pfam Stress responsive A/B Barrel Domain 8 103 IPR013097 -
Cma14g01573 109 SUPERFAMILY Dimeric alpha+beta barrel 8 105 IPR011008 -
Cma14g01573 109 PANTHER STRESS-RESPONSE A/B BARREL DOMAIN-CONTAINING PROTEIN HS1 1 108 - -
Cma14g01573 109 Gene3D - 1 108 - -
Cma14g01573 109 ProSiteProfiles Stress-response A/B barrel domain profile. 8 102 IPR013097 -
Cma14g01573 109 PANTHER - 1 108 IPR044662 -
Cma14g01573 109 SMART Dabb_2 8 104 IPR013097 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01573 - - - csv:101202790 196.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00788 Cma-Chr12:5478150 Cma14g01573 Cma-Chr14:11842205 2.75E-21 dispersed
Cma14g01573 Cma-Chr14:11842205 Cma20g00184 Cma-Chr20:893911 1.44E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g23 . . . . . . . . . . . Cma14g01573 . Car14g01386 Sed02g1121 . Cpe03g01314 Bhi01g01109 Tan10g1095 Cmetu06g2217 . Hepe05g1358 . Lcy11g1320 . . . . . . . . . . . . . . . . Blo07g00129 Bda11g00490 . . . . Bma06g01454 . . Cmo14g01606 . . . . . . . . . . . . . Cla05g00724 Cam05g0794 Cec05g0799 Cco05g0797 Clacu05g0783 . Cre05g0823 . . . .
Vvi5g215 . . . . . . . . . . . Cma14g01573 . Car14g01386 . . Cpe03g01314 Bhi01g01102 . . . . . . . . . . . . . . . . . Lsi05g01409 . . Cme06g00753 . . . . . . . . . . Cmo14g01606 . . . . . . . . . . . . . Cla05g00718 Cam05g0787 Cec05g0792 Cco05g0790 Clacu05g0777 Cmu05g0741 Cre05g0817 . Csa03g01537 Chy06g00774 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003452 1 2 1 1 1 3 1 2 3 1 3 3 1 1 1 1 2 0 1 2 1 1 1 1 1 2 1 2 1 5 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01573 Cma_Chr14 FPKM 43.713909 41.747612 46.319508 37.493652 15.843226 17.549406 13.30864 31.787838 35.441643 37.559525