Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01581 ATGGACAAGAAGCTTGAAGACACAATGATGGGGTCTGAGAATTCTGCCGGAAAATACTCTCCGGTGGTGTTTTCCGATGAATTCCCGGCGACTAGCTTTGGTTCTTATCCCGGTGTGTTCGACATGCCATGTGATGACCATAAAGCTGCTGCTTCATGTTCTTCTAATTCCTTTGACTTATTGGGGAGTGGAATTGATTTTTACAATCCTTTATCTTCCTTGTTTGATTTGGTTTCTACGACGGCGCCGCTGCTTTCCTCACCGGCCTCCACCGTGCCGGAGTCGTCGGAGGTTGTCAATGCTCCGCCCACTCCTAATTCTTCCTCCGTTTCTTCTTACTCCAATGACGCTGCCGCCATTGAAGAAGTTGACAAGAGCAACACCGAGAAGCCTTCCTCTTCTAATGTGTTGAAGCCAAAAAAGAAGAACCAGAAGAAGCAAAGAGAGCCGAGATTTGCTTTCATGACAAAGAGTGATATCGATCATCTCGACGATGGGTATCGGTGGCGAAAGTACGGTCAAAAAGCCGTGAAGAACAGTCCTTACCCTAGAAGCTATTACCGTTGTACTACGGTAGGGTGTGGTGTGAAGAAGAGAGTGGAGCGATTGTCCAACGACCAATCGACCGTCGTTACAACTTACGAAGGCCAACACACCCATCAAAGTCCGATAATTCCACGAGGTAGTATCAGAGTCCTACCGGAATCCAATCTCGACGTTACTTCCACCACCGGACTTTTATTCCAACCCAACACTCCCCAATCCTTCATGTATAGCCCTCCACCACCATTTCTAACAATCAACTCGTTGTCAACGAACCCTCGTCCTCCTTCTTCCTTTCCGCCACCACCGCCACCGCCACCGCCACCGCCACCGTCGTCTCAAGCTTTCATGCTCCGAGACCATGGGCTTTTGCAGGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAACAAAATGGATGA 972 48.77 MDKKLEDTMMGSENSAGKYSPVVFSDEFPATSFGSYPGVFDMPCDDHKAAASCSSNSFDLLGSGIDFYNPLSSLFDLVSTTAPLLSSPASTVPESSEVVNAPPTPNSSSVSSYSNDAAAIEEVDKSNTEKPSSSNVLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERLSNDQSTVVTTYEGQHTHQSPIIPRGSIRVLPESNLDVTSTTGLLFQPNTPQSFMYSPPPPFLTINSLSTNPRPPSSFPPPPPPPPPPPPSSQAFMLRDHGLLQDLVPLQMRKEPKDEQNG 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11876011 11877554 - CmaCh14G015810.1 Cma14g01581 308564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01581 323 Pfam WRKY DNA -binding domain 164 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g01581 323 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g01581 323 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 82 309 - -
Cma14g01581 323 SUPERFAMILY WRKY DNA-binding domain 155 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma14g01581 323 MobiDBLite consensus disorder prediction 257 297 - -
Cma14g01581 323 Gene3D WRKY domain 147 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma14g01581 323 MobiDBLite consensus disorder prediction 275 295 - -
Cma14g01581 323 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 82 309 IPR044810 GO:0003700
Cma14g01581 323 SMART WRKY_cls 163 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g01581 323 MobiDBLite consensus disorder prediction 86 116 - -
Cma14g01581 323 MobiDBLite consensus disorder prediction 86 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01581 - - - cmos:111457825 505.753
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma14g01581 Cma17g00379 CCT
Cma14g01581 Cma17g00379 ECH
Cma06g01571 Cma14g01581 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00480 Cma-Chr8:2725379 Cma14g01581 Cma-Chr14:11876011 5.54E-43 dispersed
Cma14g01581 Cma-Chr14:11876011 Cma19g01082 Cma-Chr19:9010129 1.75E-46 dispersed
Cma20g00797 Cma-Chr20:3733279 Cma14g01581 Cma-Chr14:11876011 1.43E-73 transposed
Cma14g01581 Cma-Chr14:11876011 Cma17g00379 Cma-Chr17:2109793 8.38E-68 wgd
Cma14g01581 Cma-Chr14:11876011 Cma06g01571 Cma-Chr6:9833175 5.42E-130 wgd
Cma14g01581 Cma-Chr14:11876011 Cma08g01289 Cma-Chr8:7800804 1.67E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g48 . . Bda03g01188 . Bpe04g01122 Bpe14g01092 . . . Cmo17g00367 Cma06g01571 Cma14g01581 Car06g01335 Car14g01391 Sed02g1129 Cpe08g00144 Cpe03g01319 Bhi01g01100 Tan10g1087 Cmetu06g2518 Lac11g0974 Hepe05g1368 . Lcy11g1329 Cla06g00419 Cam06g0441 Cec06g0447 Cco06g0446 Clacu06g0428 Cmu06g0427 Cre06g1206 . Cone15ag0722 . Cone4ag0098 Lsi05g01411 Csa06g01861 . Cme06g00800 Blo02g00473 Blo07g00133 Bda11g00494 Bda13g00224 . Bpe13g00706 Bma02g00935 Bma06g01458 . Cmo06g01565 Cmo14g01612 . Cma17g00379 . Car17g00350 Cpe12g00331 . . . . . . . . Cla05g00716 Cam05g0783 Cec05g0789 Cco05g0785 Clacu05g0773 Cmu05g0738 Cre05g0812 . Csa03g01529 Chy06g00766 Cme11g02090
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002003 3 1 2 1 3 2 4 2 2 1 2 2 5 2 2 4 2 2 4 2 1 2 2 2 2 1 2 3 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36303 PF03106 WRKY 2.60E-25 CL0274 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01581 Cma_Chr14 FPKM 1.47849 1.929363 0.528856 0.622618 0.650112 0.0 0.321072 0.271484 0.431223 0.148844