Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01590 ATGGTTTCCAGTAATCGAGCGACGCATTGGCATCAACAACAAGCACAGTCCTCGAACACGAATACTAGCAATTTCCGATCTCACCGTACAGATTCTGTCAACAAAGCCATAGCGCAGTACACAGCCGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGGAAATCTTTTGACTACTCACAATCTATAAGAACTTCGACGCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGAGGCGGCCATATCCAGCCCTTTGGATGTATGATAGCCATAGATGAGGCTAGTTTTCGGGTTATTGCATACAGTGAGAACGCTAGGGAATTGCTCGGTTTAACTCCCCAATCAGTGCCGAGTCTTGAAAAGCCTGAGATCCTCACAATTGGGACTGATGTACGGAATTTGTTCACTTCCAACAGTGCAATTCTGCTCGAGAAGGCATTTGGGGCTCGAGAAATCACTTTGTTGAACCCTGTTTGGATTCATTCCAAGAATTCTGGTAAGCCTTTTTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGCGCAGTCCAATCGCAAAAACTTGCGGTACGTGCTATTTCTCAGTTACAATCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGGGTTATGGTGTATAAATTTCACGAGGATGAACATGGTGAGGTTGTGGCTGAAAGCAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGTGTTAGGATGATCGTTGATTGCAATGCCTCTTCAGTTCGTGTAATTCAGGAGGCAGGGCTTATGCAACATCTATGCTTGGTGGGTTCAACTCTTCGGGCTCCCCATGGCTGCCATGCTCAGTATATGGCCAATATGGGCTCCATTGCTTCATTAGCAATGGCAGTTATTATCAATGGTAATGATGATGAAGCTATTGGCGGGCAAAACTCAACAAGGCTTTGGGGTTTGGTTGTCTGCCACCATACTTCTGCTCGGTGTATTCCATTCCCACTTCGGTATGCCTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAACTGGGATTGTTACACAGAGTCCAAGCATCATGGACCTTGTAAAGTGTGATGGGGCAGCTCTCTACTATCAAGGGAAATATTACCCTCTGGGTGTTACGCCAACCGAGGCCGAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCCAGGGGCAGCCTTGCTGGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACAAAAAGGGATTTGCTATTTTGGTTCCGATCACATACAGCAAAAGAGATCAAATGGGGTGGCGCAAAGCATCACCCAGAGGATAAGGACGATGGTCAAAGAATGCATCCACGTTCTTCATTCAAGGCATTCTTGGAAGTTGTAAAATCCCGTAGTTTACCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTGCGAGACTCATTTAAGGAAGATGTGGCAATGACTTCAAAGGCAGTTGTGCACCCTCAACTAGGGGATCTTGACTTGCAAGGGATCGACGAGCTCAGCTCAGTTGCAAGAGAAATGGTCAGGTTAATTGAGACTGCAACTGCCCCTATCTTTGCTGTAGATGCCGATGGTCATATCAATGGATGGAACGCTAAGATAGTTGAGTTGACTGGGCTTGCAGCTGAGGAAGCTATGGGGAAATCCTTAGTTCGTGAAGAAGACAAAAATGTAGAGATAAAAATGAGGACATTTGGGCCGGAAGATCAAAGAACGCCAATTTTTGTGGTTGTAAATGCTTGCTCTAGCAGGGACTACACCGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAAGGTGATTATAAAGCAATCGTTCATAGTCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCAGAATGGAATACCGCCATGGAAAAGCTCACTGGATGGTCCAAAGAGGACATAATTGGAAAAATGCTAGTAGGAGAAGTTTTTGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCTTGCACAGTGCAATTGGTGGGCAGGACAATGAAAAATACCCCTTTTCTTTTTACGACAAAAAGGGGAAATATGTGCAAGCTCTCTTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCTAGTCCTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTCGCTAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGCATACGCTTCACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAACAGTTCCTCGAGACCAGTGTTGCTTGTGAAAAGCAGATGTTGAAGATTATAGAAGATATGGATTTGGAATGTATTGATGATGGTACGATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATCAATGCTGTTGTTAGCCAAGTGATGATACTCCTCAGAGAAAGGAACTTACAGCTAATCCGTGATATACCAGAAGAAGTAAAGACTATGGCTGTCTATGGCGATCAAATGAGGATTCAACAGGTCTTAGCTGATTTCTTGTTGAATATGGTCCGTTACGCACCCTCTCCAGAAGGTTGGGTAGAAATACGTGTCTGTCCATTTTTGAAGCAAAATCCAGATGGACATACTCTTGCACACACTGAATTCAGATGGGTGACTCAAGAAGGCTTAGGCTTAAGCATGTGCAGAAAGATATTGAAGCTCATGAATGGTGAAGTCCAGTACATCAGAGAGTCTGAAAGGTGTTATTTCTTGATCACTCTTGAACTCCCCTTGACAGAGAGAGGCCTAAACGACGTC 3264 43.9 MVSSNRATHWHQQQAQSSNTNTSNFRSHRTDSVNKAIAQYTADARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIDEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCNASSVRVIQEAGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDDEAIGGQNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAEIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITKRDLLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKEDVAMTSKAVVHPQLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGHINGWNAKIVELTGLAAEEAMGKSLVREEDKNVEIKMRTFGPEDQRTPIFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFISIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSKEDIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEVKTMAVYGDQMRIQQVLADFLLNMVRYAPSPEGWVEIRVCPFLKQNPDGHTLAHTEFRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLNDV 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11927099 11932745 - CmaCh14G015900.1 Cma14g01590 308573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01590 1088 Gene3D - 210 568 IPR029016 -
Cma14g01590 1088 ProSiteProfiles PAS repeat profile. 735 787 IPR000014 -
Cma14g01590 1088 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Cma14g01590 1088 CDD PAS 633 719 IPR000014 -
Cma14g01590 1088 Gene3D PAS domain 748 856 - -
Cma14g01590 1088 ProSiteProfiles Histidine kinase domain profile. 883 1082 IPR005467 -
Cma14g01590 1088 PIRSF Phytochrome_conventional 1036 1087 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cma14g01590 1088 PIRSF Phytochrome_conventional 13 1040 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cma14g01590 1088 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 864 932 IPR036097 GO:0000155|GO:0007165
Cma14g01590 1088 Pfam GAF domain 229 407 IPR003018 GO:0005515
Cma14g01590 1088 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Cma14g01590 1088 SMART pas_2 734 804 IPR000014 -
Cma14g01590 1088 SMART pas_2 624 687 IPR000014 -
Cma14g01590 1088 Gene3D PAS domain 617 725 - -
Cma14g01590 1088 SMART HisKA_10 876 940 IPR003661 GO:0000155|GO:0007165
Cma14g01590 1088 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 715 IPR035965 -
Cma14g01590 1088 Pfam His Kinase A (phospho-acceptor) domain 880 940 IPR003661 GO:0000155|GO:0007165
Cma14g01590 1088 TIGRFAM sensory_box: PAS domain S-box protein 629 671 IPR000014 -
Cma14g01590 1088 SMART HKATPase_4 988 1082 IPR003594 -
Cma14g01590 1088 Pfam PAS fold 80 196 IPR013654 GO:0006355
Cma14g01590 1088 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Cma14g01590 1088 SUPERFAMILY PYP-like sensor domain (PAS domain) 749 853 IPR035965 -
Cma14g01590 1088 ProSiteProfiles PAS repeat profile. 622 672 IPR000014 -
Cma14g01590 1088 PANTHER TWO-COMPONENT HISTIDINE KINASE 8 1083 - -
Cma14g01590 1088 Pfam PAS fold 625 719 IPR013767 GO:0006355
Cma14g01590 1088 Pfam PAS fold 735 854 IPR013767 GO:0006355
Cma14g01590 1088 Gene3D - 412 585 IPR043150 -
Cma14g01590 1088 SUPERFAMILY GAF domain-like 415 592 - -
Cma14g01590 1088 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 717 737 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 697 714 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 CDD PAS 746 854 IPR000014 -
Cma14g01590 1088 Gene3D - 857 938 - -
Cma14g01590 1088 PANTHER PHYTOCHROME 8 1083 - -
Cma14g01590 1088 CDD HisKA 876 932 IPR003661 GO:0000155|GO:0007165
Cma14g01590 1088 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 951 1079 IPR036890 -
Cma14g01590 1088 SMART gaf_1 229 417 IPR003018 GO:0005515
Cma14g01590 1088 Gene3D PAS domain 84 332 - -
Cma14g01590 1088 Gene3D - 950 1085 IPR036890 -
Cma14g01590 1088 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Cma14g01590 1088 SUPERFAMILY GAF domain-like 209 404 - -
Cma14g01590 1088 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01590 K12121 PHYB; phytochrome B - csv:101212197 2078.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01564 Cma14g01590 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00567 Cma-Chr13:5738467 Cma14g01590 Cma-Chr14:11927099 0 dispersed
Cma14g01590 Cma-Chr14:11927099 Cma18g00452 Cma-Chr18:2495903 0 dispersed
Cma14g01590 Cma-Chr14:11927099 Cma06g01564 Cma-Chr6:9793752 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g63 Blo01g00030 . . Bda08g00333 . . . Bma05g00993 . . Cma06g01564 Cma14g01590 Car06g01329 Car14g01399 Sed02g1136 Cpe08g00149 Cpe03g01327 Bhi01g01090 Tan10g1077 Cmetu06g1585 . Hepe05g1374 . Lcy11g1336 . . . . . . . Cone14ag0717 Cone15ag0729 . . Lsi05g01420 . . Cme06g00790 . Blo07g00144 Bda11g00500 . Bpe05g00798 Bpe13g00697 . Bma06g01466 . Cmo06g01560 Cmo14g01619 . . . . . . . . . . . . . Cla05g00707 Cam05g0774 Cec05g0782 Cco05g0775 Clacu05g0764 Cmu05g0730 Cre05g0804 . Csa03g01519 Chy06g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g00120 . 5 1218 Histidine Kinase Gene Family AT2G17820 63.3 0.0e+00 1425.2
Cma16g01243 . 102 1255 Histidine Kinase Gene Family AT2G17820 64.9 0.0e+00 1414.8
Cma04g00016 . 28 1012 Histidine Kinase Gene Family AT2G01830 70.5 0.0e+00 1325.8
Cma15g00887 CST 20 979 Histidine Kinase Gene Family AT2G01830 72.0 0.0e+00 1303.5
Cma04g02142 CST 23 992 Histidine Kinase Gene Family AT2G01830 69.8 0.0e+00 1276.9
Cma17g01443 . 102 1060 Histidine Kinase Gene Family AT2G01830 52.7 7.7e-276 947.6
Cma11g01285 . 280 1223 Histidine Kinase Gene Family AT2G01830 53.8 1.9e-274 943.0
Cma20g00673 . 302 1245 Histidine Kinase Gene Family AT2G01830 52.9 7.7e-268 921.0
Cma08g00179 . 51 983 Histidine Kinase Gene Family AT2G01830 52.5 3.8e-267 918.7
Cma02g00221 . 329 1267 Histidine Kinase Gene Family AT2G01830 50.7 7.8e-260 894.4
Cma01g01683 CCT 1 992 Histidine Kinase Gene Family AT5G10720 57.2 4.8e-290 994.6
Cma09g00387 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.2 2.0e-288 989.2
Cma05g00948 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.4 0.0e+00 1817.7
Cma12g00705 . 1 1114 Histidine Kinase Gene Family AT1G09570 71.0 0.0e+00 1617.8
Cma19g00854 . 18 1087 Histidine Kinase Gene Family AT1G09570 53.8 0.0e+00 1171.0
Cma14g01590 CST 35 1078 Histidine Kinase Gene Family AT1G09570 53.6 0.0e+00 1155.2
Cma06g01564 CST 29 1123 Histidine Kinase Gene Family AT1G09570 52.5 0.0e+00 1155.2
Cma14g01590 CST 13 1041 Histidine Kinase Gene Family AT2G18790 77.1 0.0e+00 1620.1
Cma06g01564 CST 28 1064 Histidine Kinase Gene Family AT2G18790 77.2 0.0e+00 1610.9
Cma13g00567 CST 3 1047 Histidine Kinase Gene Family AT2G18790 59.2 0.0e+00 1227.6
Cma18g00452 CST 31 1051 Histidine Kinase Gene Family AT2G18790 59.3 0.0e+00 1224.5
Cma05g00948 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.0
Cma19g00854 . 26 1068 Histidine Kinase Gene Family AT2G18790 51.9 1.4e-313 1073.2
Cma12g00705 . 18 1048 Histidine Kinase Gene Family AT2G18790 50.8 6.5e-305 1044.3
Cma19g00854 . 12 1087 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1334.7
Cma06g01564 CST 29 1125 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1120.1
Cma05g00948 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1111.7
Cma14g01590 CST 21 1080 Histidine Kinase Gene Family AT5G35840 50.8 0.0e+00 1092.8
Cma12g00705 . 9 1105 Histidine Kinase Gene Family AT5G35840 50.6 0.0e+00 1080.9
Cma06g01564 CST 32 1125 Histidine Kinase Gene Family AT4G16250 74.3 0.0e+00 1649.0
Cma14g01590 CST 30 1080 Histidine Kinase Gene Family AT4G16250 74.2 0.0e+00 1616.3
Cma13g00567 CST 29 1109 Histidine Kinase Gene Family AT4G16250 57.6 0.0e+00 1261.9
Cma18g00452 CST 38 1113 Histidine Kinase Gene Family AT4G16250 57.6 0.0e+00 1257.7
Cma05g00948 . 8 1115 Histidine Kinase Gene Family AT4G16250 53.1 0.0e+00 1137.1
Cma12g00705 . 11 1109 Histidine Kinase Gene Family AT4G16250 50.5 0.0e+00 1082.8
Cma19g00854 . 26 1087 Histidine Kinase Gene Family AT4G16250 51.5 1.9e-312 1069.3
Cma13g00567 CST 12 1110 Histidine Kinase Gene Family AT4G18130 62.9 0.0e+00 1367.8
Cma18g00452 CST 15 1130 Histidine Kinase Gene Family AT4G18130 61.5 0.0e+00 1356.3
Cma06g01564 CST 40 1123 Histidine Kinase Gene Family AT4G18130 57.2 0.0e+00 1244.6
Cma14g01590 CST 38 1078 Histidine Kinase Gene Family AT4G18130 57.3 0.0e+00 1215.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01590 Cma_Chr14 FPKM 12.358762 13.400926 9.084271 10.239005 16.39942 16.377771 17.13735 6.167934 5.986669 6.122318