Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01590 ATGGTTTCCAGTAATCGAGCGACGCATTGGCATCAACAACAAGCACAGTCCTCGAACACGAATACTAGCAATTTCCGATCTCACCGTACAGATTCTGTCAACAAAGCCATAGCGCAGTACACAGCCGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGGAAATCTTTTGACTACTCACAATCTATAAGAACTTCGACGCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGAGGCGGCCATATCCAGCCCTTTGGATGTATGATAGCCATAGATGAGGCTAGTTTTCGGGTTATTGCATACAGTGAGAACGCTAGGGAATTGCTCGGTTTAACTCCCCAATCAGTGCCGAGTCTTGAAAAGCCTGAGATCCTCACAATTGGGACTGATGTACGGAATTTGTTCACTTCCAACAGTGCAATTCTGCTCGAGAAGGCATTTGGGGCTCGAGAAATCACTTTGTTGAACCCTGTTTGGATTCATTCCAAGAATTCTGGTAAGCCTTTTTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGCGCAGTCCAATCGCAAAAACTTGCGGTACGTGCTATTTCTCAGTTACAATCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGGGTTATGGTGTATAAATTTCACGAGGATGAACATGGTGAGGTTGTGGCTGAAAGCAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGTGTTAGGATGATCGTTGATTGCAATGCCTCTTCAGTTCGTGTAATTCAGGAGGCAGGGCTTATGCAACATCTATGCTTGGTGGGTTCAACTCTTCGGGCTCCCCATGGCTGCCATGCTCAGTATATGGCCAATATGGGCTCCATTGCTTCATTAGCAATGGCAGTTATTATCAATGGTAATGATGATGAAGCTATTGGCGGGCAAAACTCAACAAGGCTTTGGGGTTTGGTTGTCTGCCACCATACTTCTGCTCGGTGTATTCCATTCCCACTTCGGTATGCCTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAACTGGGATTGTTACACAGAGTCCAAGCATCATGGACCTTGTAAAGTGTGATGGGGCAGCTCTCTACTATCAAGGGAAATATTACCCTCTGGGTGTTACGCCAACCGAGGCCGAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCCAGGGGCAGCCTTGCTGGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACAAAAAGGGATTTGCTATTTTGGTTCCGATCACATACAGCAAAAGAGATCAAATGGGGTGGCGCAAAGCATCACCCAGAGGATAAGGACGATGGTCAAAGAATGCATCCACGTTCTTCATTCAAGGCATTCTTGGAAGTTGTAAAATCCCGTAGTTTACCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTGCGAGACTCATTTAAGGAAGATGTGGCAATGACTTCAAAGGCAGTTGTGCACCCTCAACTAGGGGATCTTGACTTGCAAGGGATCGACGAGCTCAGCTCAGTTGCAAGAGAAATGGTCAGGTTAATTGAGACTGCAACTGCCCCTATCTTTGCTGTAGATGCCGATGGTCATATCAATGGATGGAACGCTAAGATAGTTGAGTTGACTGGGCTTGCAGCTGAGGAAGCTATGGGGAAATCCTTAGTTCGTGAAGAAGACAAAAATGTAGAGATAAAAATGAGGACATTTGGGCCGGAAGATCAAAGAACGCCAATTTTTGTGGTTGTAAATGCTTGCTCTAGCAGGGACTACACCGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAAGGTGATTATAAAGCAATCGTTCATAGTCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCAGAATGGAATACCGCCATGGAAAAGCTCACTGGATGGTCCAAAGAGGACATAATTGGAAAAATGCTAGTAGGAGAAGTTTTTGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCTTGCACAGTGCAATTGGTGGGCAGGACAATGAAAAATACCCCTTTTCTTTTTACGACAAAAAGGGGAAATATGTGCAAGCTCTCTTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCTAGTCCTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTCGCTAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGCATACGCTTCACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAACAGTTCCTCGAGACCAGTGTTGCTTGTGAAAAGCAGATGTTGAAGATTATAGAAGATATGGATTTGGAATGTATTGATGATGGTACGATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATCAATGCTGTTGTTAGCCAAGTGATGATACTCCTCAGAGAAAGGAACTTACAGCTAATCCGTGATATACCAGAAGAAGTAAAGACTATGGCTGTCTATGGCGATCAAATGAGGATTCAACAGGTCTTAGCTGATTTCTTGTTGAATATGGTCCGTTACGCACCCTCTCCAGAAGGTTGGGTAGAAATACGTGTCTGTCCATTTTTGAAGCAAAATCCAGATGGACATACTCTTGCACACACTGAATTCAGATGGGTGACTCAAGAAGGCTTAGGCTTAAGCATGTGCAGAAAGATATTGAAGCTCATGAATGGTGAAGTCCAGTACATCAGAGAGTCTGAAAGGTGTTATTTCTTGATCACTCTTGAACTCCCCTTGACAGAGAGAGGCCTAAACGACGTC 3264 43.9 MVSSNRATHWHQQQAQSSNTNTSNFRSHRTDSVNKAIAQYTADARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIDEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCNASSVRVIQEAGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDDEAIGGQNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAEIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITKRDLLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKEDVAMTSKAVVHPQLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGHINGWNAKIVELTGLAAEEAMGKSLVREEDKNVEIKMRTFGPEDQRTPIFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFISIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSKEDIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEVKTMAVYGDQMRIQQVLADFLLNMVRYAPSPEGWVEIRVCPFLKQNPDGHTLAHTEFRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLNDV 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11927099 11932745 - CmaCh14G015900.1 Cma14g01590 308573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01590 1088 Gene3D - 210 568 IPR029016 -
Cma14g01590 1088 ProSiteProfiles PAS repeat profile. 735 787 IPR000014 -
Cma14g01590 1088 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Cma14g01590 1088 CDD PAS 633 719 IPR000014 -
Cma14g01590 1088 Gene3D PAS domain 748 856 - -
Cma14g01590 1088 ProSiteProfiles Histidine kinase domain profile. 883 1082 IPR005467 -
Cma14g01590 1088 PIRSF Phytochrome_conventional 1036 1087 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cma14g01590 1088 PIRSF Phytochrome_conventional 13 1040 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cma14g01590 1088 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 864 932 IPR036097 GO:0000155|GO:0007165
Cma14g01590 1088 Pfam GAF domain 229 407 IPR003018 GO:0005515
Cma14g01590 1088 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Cma14g01590 1088 SMART pas_2 734 804 IPR000014 -
Cma14g01590 1088 SMART pas_2 624 687 IPR000014 -
Cma14g01590 1088 Gene3D PAS domain 617 725 - -
Cma14g01590 1088 SMART HisKA_10 876 940 IPR003661 GO:0000155|GO:0007165
Cma14g01590 1088 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 715 IPR035965 -
Cma14g01590 1088 Pfam His Kinase A (phospho-acceptor) domain 880 940 IPR003661 GO:0000155|GO:0007165
Cma14g01590 1088 TIGRFAM sensory_box: PAS domain S-box protein 629 671 IPR000014 -
Cma14g01590 1088 SMART HKATPase_4 988 1082 IPR003594 -
Cma14g01590 1088 Pfam PAS fold 80 196 IPR013654 GO:0006355
Cma14g01590 1088 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Cma14g01590 1088 SUPERFAMILY PYP-like sensor domain (PAS domain) 749 853 IPR035965 -
Cma14g01590 1088 ProSiteProfiles PAS repeat profile. 622 672 IPR000014 -
Cma14g01590 1088 PANTHER TWO-COMPONENT HISTIDINE KINASE 8 1083 - -
Cma14g01590 1088 Pfam PAS fold 625 719 IPR013767 GO:0006355
Cma14g01590 1088 Pfam PAS fold 735 854 IPR013767 GO:0006355
Cma14g01590 1088 Gene3D - 412 585 IPR043150 -
Cma14g01590 1088 SUPERFAMILY GAF domain-like 415 592 - -
Cma14g01590 1088 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 717 737 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 697 714 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Cma14g01590 1088 CDD PAS 746 854 IPR000014 -
Cma14g01590 1088 Gene3D - 857 938 - -
Cma14g01590 1088 PANTHER PHYTOCHROME 8 1083 - -
Cma14g01590 1088 CDD HisKA 876 932 IPR003661 GO:0000155|GO:0007165
Cma14g01590 1088 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 951 1079 IPR036890 -
Cma14g01590 1088 SMART gaf_1 229 417 IPR003018 GO:0005515
Cma14g01590 1088 Gene3D PAS domain 84 332 - -
Cma14g01590 1088 Gene3D - 950 1085 IPR036890 -
Cma14g01590 1088 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Cma14g01590 1088 SUPERFAMILY GAF domain-like 209 404 - -
Cma14g01590 1088 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01564 Cma14g01590 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00567 Cma-Chr13:5738467 Cma14g01590 Cma-Chr14:11927099 0 dispersed
Cma14g01590 Cma-Chr14:11927099 Cma18g00452 Cma-Chr18:2495903 0 dispersed
Cma14g01590 Cma-Chr14:11927099 Cma06g01564 Cma-Chr6:9793752 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01590 K12121 - csv:101212197 2078.91