Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01594 ATGACTAATATGGCTCTTCGGAAGTTTGTTTGTGGTGCTACACCTTCTATTAACTTGAAACATTCAAGTTTTCCCGCTAAGGTGCATGAGCAAGCTCAATTTGAAGAACCTGAGACTAACCAGACGTTGGAGTCTGATGTAGAAATTGACCCTAGAGAAGTTTATTTTCTTATTATGCACTTTCTTTCATCTGGGCCATGTCGTAGAACTTGTGGGCTGCTCTGGGATGAGCTTTTTGAAAATCAGCTTTTACCCCGACGATATCATGCTTGGTATTCAAGAAATGGGATGCATAGTGGGCATGAAAATGACGATGGCTTGTCATTTCCATTAAGTTACCAACACTTAGTGGAGAGGTATCCACATGTCGATAAGAATCACCTGATAAAGCTTTTGAAGCAATTGATGCTTAACAAGGCCCCTCCATCTAGGGGTATGAGTGGTGCAATTGCTCCAAATGCAGCGGACGTACCTACATTATTGGGAACGGGCACATTTTCACTTCTGAGCTATGATAAACATGATGGAGTTGGCAAACCAAGTGGTCCCCCGGCACACATGCGTTGGCCTCATATGAAAGCTGATTCTGTTCGTGGATTAAGTTTGAGAGAAATTGGAGGTGGTTTCTCCCGACATCAACGTGCTCCTTCTGTGCGTGCAGCATGTTATGCAATTGCTAAGCCATCAACAATGGTGCAGAAAATGCAAAACATAAAGAGGCTACGAGGGCATCGTAATGCTGTTTATTGTGCAAGTTTTGATCGCATGGGAAGGTATGTTATAACTGGTTCAGATGATCGCCTTGTAAAGATTTGGTCAATGGAAACTGCATATTGCTTGGCAAGCTGCCGAGGACATGAGGGTGATATCACTGACCTTGCTGTAAGTTCTAACAATGCTGTGGTGGCGTCATCTTCAAATGATTTTGTTATTCGTGTTTGGCGTTTGCCTGATGGGCTGCCAATTTCAGTCTTACGAGGACATACTGGTGCTGTTACTGCAATTGCCTTTAGTCCCAGAGCTGCCTATCAGCTTCTTTCATCGTCAGATGATGGAACGTGTAGGTTATGGGATGCTCGGAGCTCTTCTCAGAATGCTCCTCGGATTTATGTTCCAAGGCCTTTGGACTCTGTGATTGCAAGAAATGGTGGCTCTTCTGCGAGTACTCTTCCTCAGAGTCATCAAATATTTTGCTGTGCATTTAATGCTTGTGGCACTATTTTTGTTACTGGTAGTTCTGACACTCTAGCAAGGGTTTGGAGTGCCTGTAAAGGAAACAATGATAACCCAGACCAACCAAACCACGAGATTGATGTGTTAGCTGGCCATGAGAATGATGTCAATTATGTGCAATTCAGTGGATGTGCCGTAGCATCAAGATTTACAACTACTGACATTGTGAAGGAAGACAATGTTCACAAGTTCAAAAACTCCTGGTTCACTTATGACAATATAGTTACTTGTTCTCGTGATGGCAGTGCAATTATTTGGGTTCCAAGGTCACGGAGGTCACATGGGAAGGTAGGTCGCTGGACCCGTGCATACCATTTAAAAGTGCCTCCTCCACCCATGCCCCCACAACCTGCCCGAGGTGGCCCTCGTCAGAGGATTCTTCCTACCCCTCGTGGTGTAAATATGATAATTTGGAGCCTAGATAATCGTTTTGTCTTAGCAGCTATAATGGATTGTAGAATTTGTGTTTGGAATGCCTCTGATGGGAGCTTAGTGCACTCTTTGACGGGTCATACTGAATCTACGTATGTACTCGATGTTCATCCTTTTAATCCAAGGATTGCTATGAGTGCTGGATACGATGGAAAAACAATAGTTTGGGATATTTGGGAAGGCACGCCAATTCGGATATATGAAATTTCTCATTTCAAACTGGTTGATGGGAAGTTTTCTTCAGACGGGACATCAATTATACTTTCAGATGATGTTGGGCAGCTATATATATTAAGCACCGGTCAGGGAGAATCCCAACAGGATGCCAAGTATGATCAGTTCTTTCTTGGTGACTATCGCCCACTTATTCAGGATCCTTTCGGCAATGTAGTTGACCAAGAAACCCAACTCAGTACTTACAGACGGAATTTGCAAGATCTCCTTTCTGACTCAGGCATGATACCTTATCCGGAACCTTATCAGACTGCATATCAGCAAAGACGTTTAGGTGCTATGGGTCTTGAGTGGCGTCCCTCTTCGCTAAAACTTTCTACTGGGCCTGACTTCAATCTCGACCCAGATTACCAATTGCTGCCTTTGGCAGACTTGGACATGTTGATTGAACCATTGCCTGAGATTGTGGATGCAATGGATTGGGGACCAGAAAATGAAGTACAAAGCGATGATACTGATTCGGAATACAACGTCACTGAGGATTACTCTACTGGTGGGGAGCAAAGAAGCCTAAATTCGAACTGCTCAACGGATTCAGAATGTAGCTCTGATGACACAGGGATTGACGATGGTCTTCGAAGGTCAAAAAGGAAAAAACAGAAAGCATACATGGAGGTCATGACTTCTTCAGGAAGGCGTGTTAAAAGAAGAAATATGGATGAGTATGAAGGTGATACTGTTAGGAATTCCAGAAATCGGAAGTCAAAATCTGGTCATAGAGCATCCAAAAAGAAATCAGCATCTAAGTCATTAAGACCTCAAAGAGCGGCTGCACGTAATGCCCGCAACTGGATATCATCGTTTAAGGGAAAATGTACAGATGGAGAAGATGAATATGAGTCGGGAGGTGATTGCTCAGAAAGTGAATCTACATTAGAAGATTCAGACATTGAGAGTGATGAATATGAAAGGTCATTGCAAAACAGAAATAAACATTCAAAAGGGAAAGAAGTATTCCTTGATGAAGCTGAGTTGATTACAAAACCTCTCGACGTTCCTGAATCTCGTGTAGATTCTGGAAACAGAAAGAAGTTGATCCTTAAATTCTCCCTTAAGAATCCAAATAAGGTTGATCCTCCTTCAAACACAACACTTACTTGCACCAACATGGCTGATGTGGCTAGCTCATCATCAAGATCACCAAAGGAAGTTATTGAAACCAGTCAGAATCTTATGAGATCCGAGAGACAATTTGGAAATACTGATGGACATTCTGATCTGACTGAGGTCTACACAAATGGGAACATAAGATGGGGAGGGTCCAAGGTTCGTTCGTCCAAGCGCATAAGATTAGATGCATATGCATTATCTAGTCCATTTCGCAATGGTGATCATAATGAAAATGAGAATACTGTTCATGAATATTTAGAACGAGAAAATCATTTTGGTGCACCATCCCCCCATTCAAAGATACAGAATTATCATGCAGATGAAACACATGCTGTATCCCTGACGAATTTGAAAGATGACGATGATAATGCTTCTGGGCACTCTCCTGAGATGGTCAATGGTGGTGAGCTCAAATGTGTTAGCAACAGCAAATCATGTGATGATCATGATGATTCAAATAATTTGAATTTCATGTTTTCTTCAGATGCAACCACATCAATACAATATGGGACTCCTGCTCCTGAGCAAACTGAAAATATTGCACCAATGTGTACAAAGATAAGGTTGAAGAGTAGTTCTTTGGATCCTGAACATTCTTTGAAGCACAAAATAGAATCCTTAGACGAAAATTCAAAGAATGATGAATACTATACAGTATCTGGAAGCCCACGGCGTCTGAATGGGCTGCAGGATACTGTCATGAATGAAGCTTTTTCTGATCTTAGAAATGATTGCCCACAAGATATGGACACTGCGATGGATGAAAAACCAATATCAACCTTATGCAGCTCATCAGAGTTGCAAGCAGTTGAGACAAACAAAATGTACACTGCTGTTTATAGAAGATCCAAGTCGAACAAAGGAAAGAGCAATATAGAAAGCAACGGTTGTGACTCAGGGGAACATGCATTGGGCAACATTAGTCTGTCTGCTGAAGCAAACAATCACAAAAGTATGCTTCGTAAGACACGATCTTTAAGGTTCAAGGACTCATATGATCCAAATAATGTGTGTGATGATCTAAAATCAGACGAAGATCAAGAACTTGAACAAAAATCAAGACGTTCTGGAAATTCTCCTGCAAACAGATCCCATATACCAAGTGAAGAGTGGGGATCAAGCTCAAGGATGACTGTTGGATCCAGATCCACTCGAAACAGAAGGGGTAGTCTTACTCAAGACCTAAATCCTGTAGATAGAAGAAAGTCGGTTCAATATGCCAGAAAAGGATCATGGTTAATGATGCCTGCACATGAGGGTGGCTCCAGATATATTCCTCAACTTGGAGATGAAGTTGCATATCTGAGACAGGGTCATCAGGAATACATAGATCACTGCTGTGCAAATTACTGTCACACAAAAGACATGGGACCTTGGACCGCAACCCGAGGAACCATACGAGCTGTTGAGTTCTGTAAGGTTGTGGAGCTTGTTTATTCAACTTCTGCAGGTTCCGGAGATAGTTGCTGTAAAATGCTACTCAAGTTCATAGATCCTGCTTCCTCTGTATACTTCCAATCTTTCAAGTTAACTCTGCCCGAGTTGACTAGTTTCCCTGACTTCTTAGTCGAAAGAACTCGGTTTGAAGCAGCAATGCAGAGGAATTGGACATTCAGGGACAAGTGCAAAGTGTGGTGGAAAAATGATGTTGGAGTAGATGGTAGTTGGTGGGATGGTCGGATTGTCTCTGTGCAGCCAAAATCTTCAGAGTTTCCAGAAAGTCCTTGGGAAAGGTACACAATTAAGTATAGGAGTGATCCTGCAGAACCACATTTACATAGTCCTTGGGAGCTTTATGATATTGTTACTCAGTGGGAACAGCCTCGAATAGATGACGAAAATAAAGCAAAGTTGTCGACTGCCTTCGACCAATTAATGTCGGCCCCTATGCAGGGCCGTTATGGGATTCAAGATCTGATGCTTCTCTCACGGAAGACACAATTCAAGAACAGGTTTCCTGTACCATTGTGCCTTGAGATAATCCAGGAAAGATTACAGAACGATTACTACCGAAACTTGGAAGCTTTGAAGCATGACTTCATGGTAATGCTATCGAATTACGAGTCATTCGTGGCTAAGAACGAAGACATGTCGAAGAAAATTAGACGCTTGTCAGACTGGTTTAATCGCAACATATCGACTTTATAG 5157 42.25 MTNMALRKFVCGATPSINLKHSSFPAKVHEQAQFEEPETNQTLESDVEIDPREVYFLIMHFLSSGPCRRTCGLLWDELFENQLLPRRYHAWYSRNGMHSGHENDDGLSFPLSYQHLVERYPHVDKNHLIKLLKQLMLNKAPPSRGMSGAIAPNAADVPTLLGTGTFSLLSYDKHDGVGKPSGPPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCASFDRMGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRAAYQLLSSSDDGTCRLWDARSSSQNAPRIYVPRPLDSVIARNGGSSASTLPQSHQIFCCAFNACGTIFVTGSSDTLARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDIVKEDNVHKFKNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPFGNVVDQETQLSTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRLGAMGLEWRPSSLKLSTGPDFNLDPDYQLLPLADLDMLIEPLPEIVDAMDWGPENEVQSDDTDSEYNVTEDYSTGGEQRSLNSNCSTDSECSSDDTGIDDGLRRSKRKKQKAYMEVMTSSGRRVKRRNMDEYEGDTVRNSRNRKSKSGHRASKKKSASKSLRPQRAAARNARNWISSFKGKCTDGEDEYESGGDCSESESTLEDSDIESDEYERSLQNRNKHSKGKEVFLDEAELITKPLDVPESRVDSGNRKKLILKFSLKNPNKVDPPSNTTLTCTNMADVASSSSRSPKEVIETSQNLMRSERQFGNTDGHSDLTEVYTNGNIRWGGSKVRSSKRIRLDAYALSSPFRNGDHNENENTVHEYLERENHFGAPSPHSKIQNYHADETHAVSLTNLKDDDDNASGHSPEMVNGGELKCVSNSKSCDDHDDSNNLNFMFSSDATTSIQYGTPAPEQTENIAPMCTKIRLKSSSLDPEHSLKHKIESLDENSKNDEYYTVSGSPRRLNGLQDTVMNEAFSDLRNDCPQDMDTAMDEKPISTLCSSSELQAVETNKMYTAVYRRSKSNKGKSNIESNGCDSGEHALGNISLSAEANNHKSMLRKTRSLRFKDSYDPNNVCDDLKSDEDQELEQKSRRSGNSPANRSHIPSEEWGSSSRMTVGSRSTRNRRGSLTQDLNPVDRRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQGHQEYIDHCCANYCHTKDMGPWTATRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLLKFIDPASSVYFQSFKLTLPELTSFPDFLVERTRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIVSVQPKSSEFPESPWERYTIKYRSDPAEPHLHSPWELYDIVTQWEQPRIDDENKAKLSTAFDQLMSAPMQGRYGIQDLMLLSRKTQFKNRFPVPLCLEIIQERLQNDYYRNLEALKHDFMVMLSNYESFVAKNEDMSKKIRRLSDWFNRNISTL 1718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11963318 11980259 + CmaCh14G015940.1 Cma14g01594 308577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01594 1718 MobiDBLite consensus disorder prediction 866 883 - -
Cma14g01594 1718 MobiDBLite consensus disorder prediction 907 947 - -
Cma14g01594 1718 Gene3D - 534 668 IPR015943 GO:0005515
Cma14g01594 1718 MobiDBLite consensus disorder prediction 912 933 - -
Cma14g01594 1718 Gene3D - 392 524 IPR015943 GO:0005515
Cma14g01594 1718 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Cma14g01594 1718 PANTHER WD REPEAT DOMAIN 9 42 1718 - -
Cma14g01594 1718 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 361 - -
Cma14g01594 1718 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 316 - -
Cma14g01594 1718 MobiDBLite consensus disorder prediction 776 895 - -
Cma14g01594 1718 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 367 IPR001680 GO:0005515
Cma14g01594 1718 SUPERFAMILY WD40 repeat-like 232 655 IPR036322 GO:0005515
Cma14g01594 1718 MobiDBLite consensus disorder prediction 1332 1356 - -
Cma14g01594 1718 Pfam Bromodomain 1650 1703 IPR001487 GO:0005515
Cma14g01594 1718 MobiDBLite consensus disorder prediction 1357 1399 - -
Cma14g01594 1718 Pfam WD domain, G-beta repeat 393 421 IPR001680 GO:0005515
Cma14g01594 1718 Pfam WD domain, G-beta repeat 321 358 IPR001680 GO:0005515
Cma14g01594 1718 Pfam WD domain, G-beta repeat 573 612 IPR001680 GO:0005515
Cma14g01594 1718 Pfam WD domain, G-beta repeat 279 314 IPR001680 GO:0005515
Cma14g01594 1718 Pfam WD domain, G-beta repeat 236 273 IPR001680 GO:0005515
Cma14g01594 1718 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 42 1718 - -
Cma14g01594 1718 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 282 IPR001680 GO:0005515
Cma14g01594 1718 Gene3D - 1616 1718 IPR036427 GO:0005515
Cma14g01594 1718 Coils Coil 685 705 - -
Cma14g01594 1718 CDD WD40 237 612 - -
Cma14g01594 1718 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 276 - -
Cma14g01594 1718 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 324 IPR001680 GO:0005515
Cma14g01594 1718 Gene3D - 211 391 IPR015943 GO:0005515
Cma14g01594 1718 MobiDBLite consensus disorder prediction 791 815 - -
Cma14g01594 1718 MobiDBLite consensus disorder prediction 1332 1399 - -
Cma14g01594 1718 MobiDBLite consensus disorder prediction 843 865 - -
Cma14g01594 1718 SUPERFAMILY Bromodomain 1656 1716 IPR036427 GO:0005515
Cma14g01594 1718 SMART WD40_4 433 498 IPR001680 GO:0005515
Cma14g01594 1718 SMART WD40_4 318 358 IPR001680 GO:0005515
Cma14g01594 1718 SMART WD40_4 572 612 IPR001680 GO:0005515
Cma14g01594 1718 SMART WD40_4 383 421 IPR001680 GO:0005515
Cma14g01594 1718 SMART WD40_4 234 273 IPR001680 GO:0005515
Cma14g01594 1718 SMART WD40_4 276 315 IPR001680 GO:0005515
Cma14g01594 1718 SMART WD40_4 531 569 IPR001680 GO:0005515
Cma14g01594 1718 ProSitePatterns Trp-Asp (WD) repeats signature. 599 613 IPR019775 -
Cma14g01594 1718 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 621 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01594 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 3115.86
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01559 Cma14g01594 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01594 Cma-Chr14:11963318 Cma14g00989 Cma-Chr14:5185502 7.13E-08 dispersed
Cma06g01559 Cma-Chr6:9754232 Cma14g01594 Cma-Chr14:11963318 0 transposed
Cma09g00587 Cma-Chr9:2703158 Cma14g01594 Cma-Chr14:11963318 1.21E-08 transposed
Cma14g01594 Cma-Chr14:11963318 Cma06g01558 Cma-Chr6:9751433 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01594 Cma_Chr14 FPKM 5.503469 6.343168 4.84138 4.902157 7.856213 8.470552 8.142873 7.126263 6.383765 6.077388