Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01599 ATGGAAGATTTCAATGGTTTAGGGTATGGGGACACCTTCTCTTCACCCCATGATCAACAGCCAATGTCCGGGGGGAGTAAGTACGGAGGTTTGGTGCCAAGGAAGAAGCCCTTGATCTCAAAGGATAAGGAAAGAGCGTTCTTTGATTCAGCGGACTGGGCCTTATGCAAGCAAGGGGCTGGTGGAGGGCATCATGAAACAATGGCAATGGTGGAGACTCTGCGACCCAAATTACAGAGAACCCAACGCCAGCAGCTTCCTCCTCGGCGACCCGCTTGCACCTCGGGACAAGACAACCTTGTACCGTCAAACACTGCAGGATTGTTAAGATGCGGAAAGAGTTGCAGACTGAGATGGATTAACTATCTGAGAACAAATTTAAAGAGAGGGAACATTACACCCGAGGAAGAACAAAAGATCGTAAAGCTGCATAATGTTTTAGGCAACAGGTGGTCTGTAATAGCGGGACATTTGCCTGGTCGAACCGACAATGAAATAAAGAATTATTGGAATTCTCATCTAAGTCGAAGAATCTACACTGTGACACGACCATCTGCCACGAAGTCTTCTTCACCGATCACTTGCCTCCTAGGGATCATTCCCGTGCCGAAGCGGAAGCGGGATGTGACGTATGGAAGAAGGGAAGAACAAGGTGGCATAGTGAAAGGAAAAGAAGAGGATGATAAAGAGGATGGCAAGACGTTGGGGAAGGAAGTGGTATTGAGGTCCATAATGGGTGATGGGGATGGGGAGAGTTTGGGACCATATGAGTGGGTTGATGGCGAAATAATGACACTAAATAATGGAATGGTGAAAGCCAGTGGGAATCAATGCATGGATGAAGATCATGGGAATGGGTATTGTTCTTCTACACCCTTTGAAAAGGATCAATGGCTGAATTGGGAGTGGGAAGAATATGGATCCATTCATGAAGGGCATGAAAATAACAAGGACGGAGAAAAGAGATGCTCGTATAGCGGCAGCGGAAAGACGCCGCTGCTGTGTACGGTGAGCGCGTTTCTCGCGATGGCGGTGATGATGGTGGTGCAGCATTTGTGTGTGTTGATTGCAGTGAGTAAGTCGCCACCGCCTGCTCTCATTGCTTTGGATCCTTCTTTTGCCATTTCCAAATTGCTAACCTTTCAAGCTGCTTTCTTCTTCGTTTCAACATGGATAAGTTTTGGCGTGGGAGAAATTTTGTTGTTAATTGGATTGAGTGTGGAATCCGGCCATCTAAAGAACTGGTGGACTCCAAAAGAGAGCTGTTTGGCGATCAAAGAAGGCTTATTTTCAGCCGCCGGAGTTTTTGAATTGGCGACGGTGTTCCTCGCCGCCGGGCTGTACATGACGGCGGCGCGAGCACAGAGAATGTTTGAAGAGCAAGAAAACGTGAGAAGAGAGGTGGTGGCAAGTTACCATATCCACAGTTCACCGCCGTGGACGCCGCCGCTGCAGACAATGCCGCCGGTTGGGAGAGAGGACCCTGTAATCATACAAAGCCGCCATCAACAGACTCCCTTATCGTTGCTGCTTCACACCGCCGCTTCCTGCAAACTCTCTCCTTAA 1566 48.66 MEDFNGLGYGDTFSSPHDQQPMSGGSKYGGLVPRKKPLISKDKERAFFDSADWALCKQGAGGGHHETMAMVETLRPKLQRTQRQQLPPRRPACTSGQDNLVPSNTAGLLRCGKSCRLRWINYLRTNLKRGNITPEEEQKIVKLHNVLGNRWSVIAGHLPGRTDNEIKNYWNSHLSRRIYTVTRPSATKSSSPITCLLGIIPVPKRKRDVTYGRREEQGGIVKGKEEDDKEDGKTLGKEVVLRSIMGDGDGESLGPYEWVDGEIMTLNNGMVKASGNQCMDEDHGNGYCSSTPFEKDQWLNWEWEEYGSIHEGHENNKDGEKRCSYSGSGKTPLLCTVSAFLAMAVMMVVQHLCVLIAVSKSPPPALIALDPSFAISKLLTFQAAFFFVSTWISFGVGEILLLIGLSVESGHLKNWWTPKESCLAIKEGLFSAAGVFELATVFLAAGLYMTAARAQRMFEEQENVRREVVASYHIHSSPPWTPPLQTMPPVGREDPVIIQSRHQQTPLSLLLHTAASCKLSP 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12018287 12026836 + CmaCh14G015990.1 Cma14g01599 308582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01599 521 ProSiteProfiles Myb-like domain profile. 124 174 IPR001005 -
Cma14g01599 521 SUPERFAMILY Homeodomain-like 110 179 IPR009057 -
Cma14g01599 521 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 178 IPR017930 -
Cma14g01599 521 Pfam Protein of unknown function (DUF1218) 339 441 IPR009606 -
Cma14g01599 521 Pfam cAMP-regulated phosphoprotein/endosulfine conserved region 19 92 IPR006760 -
Cma14g01599 521 PANTHER OS07G0462200 PROTEIN-RELATED 313 490 - -
Cma14g01599 521 CDD SANT 133 174 IPR001005 -
Cma14g01599 521 Pfam Myb-like DNA-binding domain 129 174 IPR001005 -
Cma14g01599 521 Gene3D - 133 178 - -
Cma14g01599 521 PANTHER OS05G0433100 PROTEIN 313 490 - -
Cma14g01599 521 SMART sant 128 176 IPR001005 -
Cma14g01599 521 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01599 - - - csv:101213882 315.079
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01264 Cma14g01599 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01553 Cma-Chr6:9718726 Cma14g01599 Cma-Chr14:12018287 1.22E-69 dispersed
Cma08g01264 Cma-Chr8:7690426 Cma14g01599 Cma-Chr14:12018287 1.32E-28 dispersed
Cma14g01599 Cma-Chr14:12018287 Cma01g00296 Cma-Chr1:1423113 5.19E-39 dispersed
Cma18g01134 Cma-Chr18:9190515 Cma14g01599 Cma-Chr14:12018287 6.44E-18 dispersed
Cma14g01599 Cma-Chr14:12018287 Cma17g00356 Cma-Chr17:1957995 2.04E-38 wgd
Cma14g01599 Cma-Chr14:12018287 Cma06g01552 Cma-Chr6:9715361 9.36E-114 wgd
Cma14g01599 Cma-Chr14:12018287 Cma08g01261 Cma-Chr8:7677253 5.96E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g97 . . . . . Bpe14g01105 . . Cmo08g01234 . . Cma14g01599 . Car14g01412 Sed09g0273 . Cpe03g01338 Bhi01g01070 Tan10g1062 Cmetu06g2308 Lac11g0917 . . . . . . . . . . . . Cone7ag0110 . . . . . . . . . . . . . . . Cmo14g01630 Cma08g01264 . Car08g01134 . . Cpe17g00055 Bhi12g01910 . . . . . . . . . . . . . . Csa03g01506 Chy06g00743 Cme11g02066
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003768 0 4 0 0 1 1 3 2 2 1 1 1 2 2 2 2 2 1 2 1 2 2 2 1 0 1 1 3 2 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36304 PF06749 DUF1218 1.10E-15 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01599 Cma_Chr14 FPKM 2.603796 3.331894 1.160384 0.900875 3.555292 3.406661 3.545716 0.0 0.0 0.0