Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01600 ATGGAAGTCAGCCAATTTCTTTCGGTGTTTTTGTTTGTTTCCATTCCAGTTGTTCTAGCTCGAGACGTTACGAAGGGGAGAATTGTGGTTGATGGAAACACAACAGTAGCAGAAACGGATGAGAATTACATTTGTATGACTTTGGACGTTTGGCCTTTTAACGAGTGCCCTCAAATGCCTTGTGTTTGGGATGGCAATGCATCGATGCTCGTTTTGAACTTGTCTCTCCCTACACTTACTAAAGCTGTGGAAGCTTTCGGGACTCTAAGAATTAGATTAGGAGGTACTTTGCAAGACAAATTGACTTACGATGTCGGGAGCTTCAAGGGTCATTGTCATCCATTTGAAAGGAGCAACAGTTCATTGTTTCGAATTACCGAGGGATGTTTATATATGGAAAGATGGGATGAATTGAACCAATTTTTCAACAAGACTGGGGCGATCGTAACTTTTGGTTTGAACGCAATCTTGGGAAGGAATAACACGATAGGTAAGCAATGGGAAGGAGATTGGAACTATAGTAATGCAGAGGCACTTATTCAATACACGATGGAGAAGAATTATCAAATCAATTCATGGGAGTTCGGCAATGAATTGAGCGGTTATAATAGTATCGGGGCAAGTATTACTGCTACACAATATGCAAAAGGTCCGAACGTTGTTGATGTTCTCACTCATCATGTATATAATATGGGTGCAGGGAATGATACCGAGATAATTCATAGGTTTTTGGATCCTTCCTATCTTAGTCGGGAATCAAGTACATTCCAAAAGCTCGAGAATGTTGTTCAATATCATGCCCCTTGGACTGTTGCTTGGGTCGGAGAAGCTGGTGGAGTCTATGGCGGTGGCAGTCCCTATGTTTCTAATACATTTGTCGATGGTTTCTGGTACATAGATCAACTCGGAATGGCTGCTTTGTACAATACCAAGGTATACTGCAGACAAACTTTAGTCGGTGGACATTATGGTGTTCTCCGACCTGAAACTTTAACCCCTTCACCCGATTACTATGGTGCACTTCTCTTTCACCGACTTATGGGTCCAGGTGTTCTCAAGGTTGACAATAACGTCTCTTCTTATTTGCGAGCTTATGCTCATTGCTCGAGAGGAAGAACAGGTATAACCATGCTTTTTATTAATATGAGCAACCAAACTGACTTCATAATCGAGATTGAAAACCACATTAATGTGAGTTTGACGGAGAAGAAGAGTCAAATGAGACAGATCTCGAAAGGTGGAAGTATAGTATCGGATTTGGGAGCACAACGAGAGGAATACCATTTGACTCCAAGTAACGGTCTGCTTAAGAGTCCCACCGTGCTTTTGAATGGAAATGTATTGGAGGCGACAGAAGAGGGAGATTTACCGAATCTTACACCTGTTTATCGCCAGACCAACTCTTCTCTAAGTATCGCTACTTGGTCTATTTCGTTTGTTGTCGTTCCCAATTTTATAGCCCCAGATCTCTCTAAGCAGGGATCGGAATCGGAGGACATATCCGGCAAAAACTCCGGCGGGGTTTCGTCGGAGGAGAGCATAGTGAACGAGCAGAACAAGAAGACATGTGCGGACTGTGGCACTTCGAAAACCCCTTTATGGCGAGGCGGCCCGGCTGGTCCAAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGTAGGAAGAAGAGGAGGGCAATTTTAGGGTTGAATCGAGGGGTTGTTGAGGATAAGAAGAGCAAGAAAAGCAGTAGTAATAACATTAGCCATAGTAAGCTAAGAGATAGCTTGAAACAGAGACTATTGGCTTTGGGTAGAGAGGTTTTGATGCAGAGATCCAGTGTTGAGAGGCAACGGAAGAAGTTAGGTGAAGAAGAACAAGCGGCTGTGCTTTTGATGGCTCTCTCTTATGGCTCAGTTTATGCTTGA 1905 43.31 MEVSQFLSVFLFVSIPVVLARDVTKGRIVVDGNTTVAETDENYICMTLDVWPFNECPQMPCVWDGNASMLVLNLSLPTLTKAVEAFGTLRIRLGGTLQDKLTYDVGSFKGHCHPFERSNSSLFRITEGCLYMERWDELNQFFNKTGAIVTFGLNAILGRNNTIGKQWEGDWNYSNAEALIQYTMEKNYQINSWEFGNELSGYNSIGASITATQYAKGPNVVDVLTHHVYNMGAGNDTEIIHRFLDPSYLSRESSTFQKLENVVQYHAPWTVAWVGEAGGVYGGGSPYVSNTFVDGFWYIDQLGMAALYNTKVYCRQTLVGGHYGVLRPETLTPSPDYYGALLFHRLMGPGVLKVDNNVSSYLRAYAHCSRGRTGITMLFINMSNQTDFIIEIENHINVSLTEKKSQMRQISKGGSIVSDLGAQREEYHLTPSNGLLKSPTVLLNGNVLEATEEGDLPNLTPVYRQTNSSLSIATWSISFVVVPNFIAPDLSKQGSESEDISGKNSGGVSSEESIVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLNRGVVEDKKSKKSSSNNISHSKLRDSLKQRLLALGREVLMQRSSVERQRKKLGEEEQAAVLLMALSYGSVYA 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12027377 12032724 + CmaCh14G016000.1 Cma14g01600 308583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01600 634 SMART GATA_3 517 577 IPR000679 GO:0006355|GO:0043565
Cma14g01600 634 Pfam GATA zinc finger 523 557 IPR000679 GO:0006355|GO:0043565
Cma14g01600 634 PANTHER HEPARANASE-RELATED 2 216 - -
Cma14g01600 634 SUPERFAMILY (Trans)glycosidases 39 347 IPR017853 -
Cma14g01600 634 Gene3D - 517 587 IPR013088 GO:0006355|GO:0008270
Cma14g01600 634 ProSitePatterns GATA-type zinc finger domain. 523 548 IPR000679 GO:0006355|GO:0043565
Cma14g01600 634 Gene3D Glycosidases 217 345 - -
Cma14g01600 634 Gene3D Glycosidases 65 216 - -
Cma14g01600 634 PANTHER HEPARANASE-LIKE PROTEIN 1 2 216 - -
Cma14g01600 634 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 517 556 - -
Cma14g01600 634 CDD ZnF_GATA 522 557 IPR000679 GO:0006355|GO:0043565
Cma14g01600 634 MobiDBLite consensus disorder prediction 491 514 - -
Cma14g01600 634 ProSiteProfiles GATA-type zinc finger domain profile. 517 553 IPR000679 GO:0006355|GO:0043565
Cma14g01600 634 Pfam Glycosyl hydrolase family 79, N-terminal domain 217 303 IPR005199 GO:0016020|GO:0016798
Cma14g01600 634 Pfam Glycosyl hydrolase family 79, N-terminal domain 26 216 IPR005199 GO:0016020|GO:0016798
Cma14g01600 634 PANTHER HEPARANASE-LIKE PROTEIN 1 216 488 - -
Cma14g01600 634 PANTHER HEPARANASE-RELATED 216 488 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01600 K07964 HPSE; heparanase [EC:3.2.1.166] - csv:101213640 686.797
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma14g01600 Cma17g00353 CCT
Cma06g01551 Cma14g01600 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00487 Cma-Chr7:2116069 Cma14g01600 Cma-Chr14:12027377 1.10E-13 dispersed
Cma07g01214 Cma-Chr7:6669754 Cma14g01600 Cma-Chr14:12027377 0 dispersed
Cma07g01215 Cma-Chr7:6679287 Cma14g01600 Cma-Chr14:12027377 0 dispersed
Cma08g00452 Cma-Chr8:2542479 Cma14g01600 Cma-Chr14:12027377 2.93E-22 dispersed
Cma10g00714 Cma-Chr10:3215791 Cma14g01600 Cma-Chr14:12027377 2.00E-15 dispersed
Cma11g00116 Cma-Chr11:621168 Cma14g01600 Cma-Chr14:12027377 6.02E-178 dispersed
Cma11g01238 Cma-Chr11:8172102 Cma14g01600 Cma-Chr14:12027377 5.31E-28 dispersed
Cma06g00282 Cma-Chr6:1368829 Cma14g01600 Cma-Chr14:12027377 0 transposed
Cma07g01073 Cma-Chr7:5740421 Cma14g01600 Cma-Chr14:12027377 1.08E-08 transposed
Cma07g01074 Cma-Chr7:5740884 Cma14g01600 Cma-Chr14:12027377 8.37E-07 transposed
Cma07g01075 Cma-Chr7:5741526 Cma14g01600 Cma-Chr14:12027377 3.13E-67 transposed
Cma07g01250 Cma-Chr7:6932755 Cma14g01600 Cma-Chr14:12027377 2.98E-97 transposed
Cma07g01251 Cma-Chr7:6934304 Cma14g01600 Cma-Chr14:12027377 1.55E-51 transposed
Cma14g01600 Cma-Chr14:12027377 Cma17g00353 Cma-Chr17:1943280 4.26E-45 wgd
Cma14g01600 Cma-Chr14:12027377 Cma06g01551 Cma-Chr6:9711918 6.14E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g110 Blo01g00058 . . Bda08g00307 Bpe04g01105 Bpe14g01108 Bma04g01139 . . Cmo17g00342 Cma06g01551 Cma14g01600 Car06g01316 Car14g01415 Sed02g1148 Cpe08g00163 Cpe03g01341 Bhi01g01062 Tan10g1053 Cmetu06g2475 Lac11g0907 Hepe05g1401 . . Cla06g00446 Cam06g0474 Cec06g0479 Cco06g0477 Clacu06g0460 Cmu06g0461 Cre06g1236 . . . . . . Chy11g01548 Cme06g00767 Blo02g00487 . Bda11g00513 Bda13g00207 Bpe05g00821 Bpe13g00684 . Bma06g01481 Sed09g0269 . Cmo14g01633 . Cma17g00353 . Car17g00324 Cpe12g00302 . Bhi12g01901 Tan06g2729 Cmetu11g0446 Lac11g0907 Hepe03g0066 . Lcy12g0779 Cla05g00682 Cam05g0749 Cec05g0755 Cco05g0755 Clacu05g0741 Cmu05g0706 Cre05g0780 Lsi09g01468 Csa03g01500 Chy06g00738 Cme11g02058
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001085 0 3 0 0 0 3 0 3 3 3 3 3 6 1 4 6 3 1 0 3 3 2 3 8 9 3 3 2 2 0 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36305 PF03662 Glyco_hydro_79n 8.00E-73 CL0058 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01600 Cma_Chr14 FPKM 8.50046 9.863041 8.274478 7.633334 24.241285 22.280069 27.74367 5.23992 6.335383 5.628175