Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g01602 | ATGTCAGTCTCCGGTGGGGTTTCCATTGCCCGAATCCGTGGCGAGAATCGTTTCTATCATCCCCCTGCGATGCGGCGTCGTTTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACACCAGCAGAAGCAGAGCGCTTTGGATTCTAAGGACGTTGTGGCGGCTGCTTCTGCTAGGATCGATGACTTGGAGAAGAGGAGTGAGTTTGACGAGTGTCGTTCTTGGTCCACTCGCTCTGATTGCTCTGTTTCGGATCGTGGACTTGCTGATTCTACTAATTTGGATCGCTTCTTGGAGCAAACTACTCCCCTTGTTTTGGCTCATTGTATTCCGAAGACGAGGCTGAGGGGATGGAGAACTCGTGAAGTCTCAGAGGCACCTCCTTATTTTGTGCTCGGGGATCTTTGGGAATCTTACAAGGAATGGAGTGCGTACGGAGCTGGTATCCCTCTATTGTTAAATGGTAGTGACTCAGTTGTACAGTACTATGTTCCATATCTGTCCGGCATTCAACTCTATATCTATCCATCAAAGTCCTCTGCCCTAAGTAGAAGGCGTGGTACAGATAGTGATGCTGAGTCTTCAAAGGAAACAAGTAGTGATGGAAGCAGTAATTGTGGGGCAGAAAAAAAAACCAAGGCCAATCTTCAGGATGAGTGTATTCAGGACTTAAGTATTTCAGGGTCACAGAGAGCTCTTCAAATGAATACACCTTCTGCCGAGTCATCGAGTGATGAAAGTGACTCTTGCTACCGTCATGGTCAGCTTGTATTTGAATACATGGAGCGTGATCCACCATTTTGTCGCGAACCATTAACCGATAAGATCAATATCCTTGCATCCCGTTTTCCTGAATTAAAGACATATAGGAGCTGTGATTTATCTCCTTCCAGTTGGATTTCTGTGGCATGGTATCCCATTTATCGGATTCCCACGGGTCCAACCCTACAAAGTCTTGATGCTTGTTTCTTGACCTTCCACAATCTGTCAACAGCATTTCAAGGCATCAGCTCTGATGGTTTGCAATTCCAATGGCCAAGAGTTAGAGAGGTGTACACTGCGGATTGCCCTCTCAAACTGCAGTTGCCAATATTTGGACTTGCTTCCTATAAGTTCAAACTTCCTTTTTGGAATTCGACTGGTACCGAGGAATGTTCAAAGGCTCAATCTTTGTGGCAAGATGCTGAATACTGGCTTAGGGTAAATCTGAATCAAGTTGAGGGATCGATGTCTACGGCGAGTTCGAGCTCTGTAAGGAAAGCCGGGGAAGCTGTTCCCGACCAGTTTCCGGTCGGGCTTCGTGTTCTTGTTGTGGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGATGACACCGGAAGCTGTGTTATTAACGAACAAGTTGTCTGGTTTTTGAGTGTTTCAGTAACGAATTGTAGTCGAGCCGAGGATGCATTGTCTCTTCTCAGACGATACAAAAACGGGTTCGATATCGTTTTAAGCGATGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATAGGATTAGAAATGGACTTGCCTGTAATCATGATGTCAGTGGATGACGGGAAAAACGTCGTCATGAAGGGAGTAACTCATGGTGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGATAAAGAACATATGGCAGCACGTTGTTCGTAAGCGGAAGAATGAATGGAAAGACTTGGAGCAATCAGGATGTGTCGATGATGTCGTCGATCGACAGCAGAAAACTAATGAAGATGCAGATTATTCATCGTCTGCTAATGAAGGGAGTTGGAAGAACTCAAAGAGGAGGAAGGAGGACGTAGAAGACGTCGAGGAGAGGGACGATTCATCGACCTTAAAGAAACCGAGGGTCGTTTGGTCCGTTGAGCTCCATCAACAGTTTATGGCTGCTGTTAATCAACTAGGAATTGATAAGGCCGTTCCGAAGAAGATACTCGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAACGTTGCCAGCCACCTTCAGAAATATCGTTTGTACCTGAGAAGAGTAAGTGGAATCACACAACACCAGAGTAATTTAAACAACACGTTCATGAGTGCCCAAGACGTGTTTGGCTCGTCGTTGAATGGTCTTGATCTTCGAACTCTCGCTGCTGCTGGTCAGCTCCAGCCACAAAGCCTTGCTACACTTCAAGCAGCTGGATTCGGTAGGTCTACAGTGAAATCGAGCATGCCTATGCCTCTTGTAGATCAAAGGAACCACATTTTTAGCTTCGAAAATCCGAAGTTGAGATTCGGTGACGAGCAACAGCAACATTTGAATGGTAGTAAATCGATGAATCTACTTCATGGAATCCCGACAACGATGGAGCCGAAACAGCTTGCTAATCTGCAGCAATCGGCGCAATCTCATGGGAATATGACAATGCAAGTTAGTGCACAAGGAAGCCAATCTAGCTCTCAACCACAAGCTAGAGCACAGATTCTCAAAGAAAGTACCTCAACGAGCGTAACGAGGCTTCCACCGACATCGCAGCAGCCAATTTTGCCGAATGGAACGGCCAGTGGAGGGTACAGTGTAGTTTCACCAGCCTCAACAATGTTAAATTTCCCCGAATTTCCCGGTAATAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCGAGTGTCGTACCAAAGGGAAGATTCCCAGACGACGTTAACTCGAACATTAATCGATCGGAAGGTTTTGTGCCAAACTATGATATGTTCAGGGACCTGCATCCTCAGAAGCCCCATGATTGGGACTTGCAACATGTCGGTGTGACGTTTGATATGTCTCAAGGTAGTCTCAACGTTCCATCCTCAGCTTTCGCTCACCAAGGGTATGCTGCCTCTAGCCAACAAAATGGACAAAACAGAAACGCATCTACTGCAGGCAAGGCCATGTTCTTGTTGGACAAACGAAGTGACAATGGGAACGAACAAAGTATAAGCCAACAACTCGACCCTCGTTTCGTCGATGGTTCAGTGAGAGTCAAAGCTGAAAGAGCTCCTGATACAAGCAGTCAGACCGACCTTTTCTCTGAACACTTCGGACCAGAGGACCTAATGAGTGCAGTTCTTAAGCAGGTTAGACCGCAGTACCGTCCTGGCATTCCTAAGACGAAACTCGGGAAGTTTAAGGTTGTTTTTATTAATGATGTGGTAAATGTTTTATTTGACAGCAACAGGGGAGCATTGCAGCAGCTGAAAGTGAACTGGAATGGATGTTTCATCATAACACTCCTGTTTAGAATGTTGCTGTAG | 3306 | 45.95 | MSVSGGVSIARIRGENRFYHPPAMRRRLQQQQQQQQQQQHQQKQSALDSKDVVAAASARIDDLEKRSEFDECRSWSTRSDCSVSDRGLADSTNLDRFLEQTTPLVLAHCIPKTRLRGWRTREVSEAPPYFVLGDLWESYKEWSAYGAGIPLLLNGSDSVVQYYVPYLSGIQLYIYPSKSSALSRRRGTDSDAESSKETSSDGSSNCGAEKKTKANLQDECIQDLSISGSQRALQMNTPSAESSSDESDSCYRHGQLVFEYMERDPPFCREPLTDKINILASRFPELKTYRSCDLSPSSWISVAWYPIYRIPTGPTLQSLDACFLTFHNLSTAFQGISSDGLQFQWPRVREVYTADCPLKLQLPIFGLASYKFKLPFWNSTGTEECSKAQSLWQDAEYWLRVNLNQVEGSMSTASSSSVRKAGEAVPDQFPVGLRVLVVDDDPTCLMILEKMLRICRYDDTGSCVINEQVVWFLSVSVTNCSRAEDALSLLRRYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEAIKNIWQHVVRKRKNEWKDLEQSGCVDDVVDRQQKTNEDADYSSSANEGSWKNSKRRKEDVEDVEERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGITQHQSNLNNTFMSAQDVFGSSLNGLDLRTLAAAGQLQPQSLATLQAAGFGRSTVKSSMPMPLVDQRNHIFSFENPKLRFGDEQQQHLNGSKSMNLLHGIPTTMEPKQLANLQQSAQSHGNMTMQVSAQGSQSSSQPQARAQILKESTSTSVTRLPPTSQQPILPNGTASGGYSVVSPASTMLNFPEFPGNSFPLQSTPGMSSVVPKGRFPDDVNSNINRSEGFVPNYDMFRDLHPQKPHDWDLQHVGVTFDMSQGSLNVPSSAFAHQGYAASSQQNGQNRNASTAGKAMFLLDKRSDNGNEQSISQQLDPRFVDGSVRVKAERAPDTSSQTDLFSEHFGPEDLMSAVLKQVRPQYRPGIPKTKLGKFKVVFINDVVNVLFDSNRGALQQLKVNWNGCFIITLLFRMLL | 1101 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 12043159 | 12055287 | - | CmaCh14G016020.1 | Cma14g01602 | 308585 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g01602 | 1101 | Gene3D | - | 433 | 582 | - | - | |
Cma14g01602 | 1101 | Pfam | Myb-like DNA-binding domain | 634 | 684 | IPR001005 | - | |
Cma14g01602 | 1101 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 406 | 1039 | IPR045279 | GO:0009736 | |
Cma14g01602 | 1101 | MobiDBLite | consensus disorder prediction | 183 | 210 | - | - | |
Cma14g01602 | 1101 | CDD | REC_typeB_ARR-like | 435 | 567 | - | - | |
Cma14g01602 | 1101 | MobiDBLite | consensus disorder prediction | 817 | 858 | - | - | |
Cma14g01602 | 1101 | MobiDBLite | consensus disorder prediction | 29 | 48 | - | - | |
Cma14g01602 | 1101 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 631 | 688 | IPR017930 | - | |
Cma14g01602 | 1101 | Gene3D | - | 629 | 691 | - | - | |
Cma14g01602 | 1101 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 632 | 685 | IPR006447 | GO:0003677 | |
Cma14g01602 | 1101 | MobiDBLite | consensus disorder prediction | 585 | 626 | - | - | |
Cma14g01602 | 1101 | SUPERFAMILY | CheY-like | 432 | 574 | IPR011006 | - | |
Cma14g01602 | 1101 | MobiDBLite | consensus disorder prediction | 608 | 626 | - | - | |
Cma14g01602 | 1101 | Pfam | Response regulator receiver domain | 435 | 561 | IPR001789 | GO:0000160 | |
Cma14g01602 | 1101 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 406 | 1039 | - | - | |
Cma14g01602 | 1101 | Pfam | Protein of unknown function (DUF789) | 92 | 401 | IPR008507 | - | |
Cma14g01602 | 1101 | SMART | REC_2 | 433 | 563 | IPR001789 | GO:0000160 | |
Cma14g01602 | 1101 | MobiDBLite | consensus disorder prediction | 29 | 50 | - | - | |
Cma14g01602 | 1101 | SUPERFAMILY | Homeodomain-like | 629 | 689 | IPR009057 | - | |
Cma14g01602 | 1101 | ProSiteProfiles | Response regulatory domain profile. | 434 | 567 | IPR001789 | GO:0000160 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma06g01547 | Cma14g01602 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01493 | Cma-Chr4:7588079 | Cma14g01602 | Cma-Chr14:12043159 | 3.87E-80 | dispersed | |
Cma04g02081 | Cma-Chr4:14373690 | Cma14g01602 | Cma-Chr14:12043159 | 1.78E-29 | dispersed | |
Cma06g01548 | Cma-Chr6:9701157 | Cma14g01602 | Cma-Chr14:12043159 | 0 | dispersed | |
Cma11g00478 | Cma-Chr11:2318504 | Cma14g01602 | Cma-Chr14:12043159 | 4.30E-90 | dispersed | |
Cma14g01602 | Cma-Chr14:12043159 | Cma15g00927 | Cma-Chr15:4880285 | 2.63E-93 | dispersed | |
Cma18g01000 | Cma-Chr18:8409298 | Cma14g01602 | Cma-Chr14:12043159 | 2.82E-87 | dispersed | |
Cma19g00442 | Cma-Chr19:5383218 | Cma14g01602 | Cma-Chr14:12043159 | 1.22E-26 | dispersed | |
Cma14g01602 | Cma-Chr14:12043159 | Cma17g00351 | Cma-Chr17:1926092 | 0 | wgd | |
Cma14g01602 | Cma-Chr14:12043159 | Cma06g01547 | Cma-Chr6:9691269 | 0 | wgd | |
Cma14g01602 | Cma-Chr14:12043159 | Cma08g01254 | Cma-Chr8:7655266 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36306 | PF05623 | DUF789 | 7.80E-95 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g01602 | - | K14491 | csv:101209013 | 1033.86 |