Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01602 ATGTCAGTCTCCGGTGGGGTTTCCATTGCCCGAATCCGTGGCGAGAATCGTTTCTATCATCCCCCTGCGATGCGGCGTCGTTTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACACCAGCAGAAGCAGAGCGCTTTGGATTCTAAGGACGTTGTGGCGGCTGCTTCTGCTAGGATCGATGACTTGGAGAAGAGGAGTGAGTTTGACGAGTGTCGTTCTTGGTCCACTCGCTCTGATTGCTCTGTTTCGGATCGTGGACTTGCTGATTCTACTAATTTGGATCGCTTCTTGGAGCAAACTACTCCCCTTGTTTTGGCTCATTGTATTCCGAAGACGAGGCTGAGGGGATGGAGAACTCGTGAAGTCTCAGAGGCACCTCCTTATTTTGTGCTCGGGGATCTTTGGGAATCTTACAAGGAATGGAGTGCGTACGGAGCTGGTATCCCTCTATTGTTAAATGGTAGTGACTCAGTTGTACAGTACTATGTTCCATATCTGTCCGGCATTCAACTCTATATCTATCCATCAAAGTCCTCTGCCCTAAGTAGAAGGCGTGGTACAGATAGTGATGCTGAGTCTTCAAAGGAAACAAGTAGTGATGGAAGCAGTAATTGTGGGGCAGAAAAAAAAACCAAGGCCAATCTTCAGGATGAGTGTATTCAGGACTTAAGTATTTCAGGGTCACAGAGAGCTCTTCAAATGAATACACCTTCTGCCGAGTCATCGAGTGATGAAAGTGACTCTTGCTACCGTCATGGTCAGCTTGTATTTGAATACATGGAGCGTGATCCACCATTTTGTCGCGAACCATTAACCGATAAGATCAATATCCTTGCATCCCGTTTTCCTGAATTAAAGACATATAGGAGCTGTGATTTATCTCCTTCCAGTTGGATTTCTGTGGCATGGTATCCCATTTATCGGATTCCCACGGGTCCAACCCTACAAAGTCTTGATGCTTGTTTCTTGACCTTCCACAATCTGTCAACAGCATTTCAAGGCATCAGCTCTGATGGTTTGCAATTCCAATGGCCAAGAGTTAGAGAGGTGTACACTGCGGATTGCCCTCTCAAACTGCAGTTGCCAATATTTGGACTTGCTTCCTATAAGTTCAAACTTCCTTTTTGGAATTCGACTGGTACCGAGGAATGTTCAAAGGCTCAATCTTTGTGGCAAGATGCTGAATACTGGCTTAGGGTAAATCTGAATCAAGTTGAGGGATCGATGTCTACGGCGAGTTCGAGCTCTGTAAGGAAAGCCGGGGAAGCTGTTCCCGACCAGTTTCCGGTCGGGCTTCGTGTTCTTGTTGTGGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGATGACACCGGAAGCTGTGTTATTAACGAACAAGTTGTCTGGTTTTTGAGTGTTTCAGTAACGAATTGTAGTCGAGCCGAGGATGCATTGTCTCTTCTCAGACGATACAAAAACGGGTTCGATATCGTTTTAAGCGATGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATAGGATTAGAAATGGACTTGCCTGTAATCATGATGTCAGTGGATGACGGGAAAAACGTCGTCATGAAGGGAGTAACTCATGGTGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGATAAAGAACATATGGCAGCACGTTGTTCGTAAGCGGAAGAATGAATGGAAAGACTTGGAGCAATCAGGATGTGTCGATGATGTCGTCGATCGACAGCAGAAAACTAATGAAGATGCAGATTATTCATCGTCTGCTAATGAAGGGAGTTGGAAGAACTCAAAGAGGAGGAAGGAGGACGTAGAAGACGTCGAGGAGAGGGACGATTCATCGACCTTAAAGAAACCGAGGGTCGTTTGGTCCGTTGAGCTCCATCAACAGTTTATGGCTGCTGTTAATCAACTAGGAATTGATAAGGCCGTTCCGAAGAAGATACTCGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAACGTTGCCAGCCACCTTCAGAAATATCGTTTGTACCTGAGAAGAGTAAGTGGAATCACACAACACCAGAGTAATTTAAACAACACGTTCATGAGTGCCCAAGACGTGTTTGGCTCGTCGTTGAATGGTCTTGATCTTCGAACTCTCGCTGCTGCTGGTCAGCTCCAGCCACAAAGCCTTGCTACACTTCAAGCAGCTGGATTCGGTAGGTCTACAGTGAAATCGAGCATGCCTATGCCTCTTGTAGATCAAAGGAACCACATTTTTAGCTTCGAAAATCCGAAGTTGAGATTCGGTGACGAGCAACAGCAACATTTGAATGGTAGTAAATCGATGAATCTACTTCATGGAATCCCGACAACGATGGAGCCGAAACAGCTTGCTAATCTGCAGCAATCGGCGCAATCTCATGGGAATATGACAATGCAAGTTAGTGCACAAGGAAGCCAATCTAGCTCTCAACCACAAGCTAGAGCACAGATTCTCAAAGAAAGTACCTCAACGAGCGTAACGAGGCTTCCACCGACATCGCAGCAGCCAATTTTGCCGAATGGAACGGCCAGTGGAGGGTACAGTGTAGTTTCACCAGCCTCAACAATGTTAAATTTCCCCGAATTTCCCGGTAATAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCGAGTGTCGTACCAAAGGGAAGATTCCCAGACGACGTTAACTCGAACATTAATCGATCGGAAGGTTTTGTGCCAAACTATGATATGTTCAGGGACCTGCATCCTCAGAAGCCCCATGATTGGGACTTGCAACATGTCGGTGTGACGTTTGATATGTCTCAAGGTAGTCTCAACGTTCCATCCTCAGCTTTCGCTCACCAAGGGTATGCTGCCTCTAGCCAACAAAATGGACAAAACAGAAACGCATCTACTGCAGGCAAGGCCATGTTCTTGTTGGACAAACGAAGTGACAATGGGAACGAACAAAGTATAAGCCAACAACTCGACCCTCGTTTCGTCGATGGTTCAGTGAGAGTCAAAGCTGAAAGAGCTCCTGATACAAGCAGTCAGACCGACCTTTTCTCTGAACACTTCGGACCAGAGGACCTAATGAGTGCAGTTCTTAAGCAGGTTAGACCGCAGTACCGTCCTGGCATTCCTAAGACGAAACTCGGGAAGTTTAAGGTTGTTTTTATTAATGATGTGGTAAATGTTTTATTTGACAGCAACAGGGGAGCATTGCAGCAGCTGAAAGTGAACTGGAATGGATGTTTCATCATAACACTCCTGTTTAGAATGTTGCTGTAG 3306 45.95 MSVSGGVSIARIRGENRFYHPPAMRRRLQQQQQQQQQQQHQQKQSALDSKDVVAAASARIDDLEKRSEFDECRSWSTRSDCSVSDRGLADSTNLDRFLEQTTPLVLAHCIPKTRLRGWRTREVSEAPPYFVLGDLWESYKEWSAYGAGIPLLLNGSDSVVQYYVPYLSGIQLYIYPSKSSALSRRRGTDSDAESSKETSSDGSSNCGAEKKTKANLQDECIQDLSISGSQRALQMNTPSAESSSDESDSCYRHGQLVFEYMERDPPFCREPLTDKINILASRFPELKTYRSCDLSPSSWISVAWYPIYRIPTGPTLQSLDACFLTFHNLSTAFQGISSDGLQFQWPRVREVYTADCPLKLQLPIFGLASYKFKLPFWNSTGTEECSKAQSLWQDAEYWLRVNLNQVEGSMSTASSSSVRKAGEAVPDQFPVGLRVLVVDDDPTCLMILEKMLRICRYDDTGSCVINEQVVWFLSVSVTNCSRAEDALSLLRRYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEAIKNIWQHVVRKRKNEWKDLEQSGCVDDVVDRQQKTNEDADYSSSANEGSWKNSKRRKEDVEDVEERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGITQHQSNLNNTFMSAQDVFGSSLNGLDLRTLAAAGQLQPQSLATLQAAGFGRSTVKSSMPMPLVDQRNHIFSFENPKLRFGDEQQQHLNGSKSMNLLHGIPTTMEPKQLANLQQSAQSHGNMTMQVSAQGSQSSSQPQARAQILKESTSTSVTRLPPTSQQPILPNGTASGGYSVVSPASTMLNFPEFPGNSFPLQSTPGMSSVVPKGRFPDDVNSNINRSEGFVPNYDMFRDLHPQKPHDWDLQHVGVTFDMSQGSLNVPSSAFAHQGYAASSQQNGQNRNASTAGKAMFLLDKRSDNGNEQSISQQLDPRFVDGSVRVKAERAPDTSSQTDLFSEHFGPEDLMSAVLKQVRPQYRPGIPKTKLGKFKVVFINDVVNVLFDSNRGALQQLKVNWNGCFIITLLFRMLL 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12043159 12055287 - CmaCh14G016020.1 Cma14g01602 308585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01602 1101 Gene3D - 433 582 - -
Cma14g01602 1101 Pfam Myb-like DNA-binding domain 634 684 IPR001005 -
Cma14g01602 1101 PANTHER TWO-COMPONENT RESPONSE REGULATOR 406 1039 IPR045279 GO:0009736
Cma14g01602 1101 MobiDBLite consensus disorder prediction 183 210 - -
Cma14g01602 1101 CDD REC_typeB_ARR-like 435 567 - -
Cma14g01602 1101 MobiDBLite consensus disorder prediction 817 858 - -
Cma14g01602 1101 MobiDBLite consensus disorder prediction 29 48 - -
Cma14g01602 1101 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 631 688 IPR017930 -
Cma14g01602 1101 Gene3D - 629 691 - -
Cma14g01602 1101 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 632 685 IPR006447 GO:0003677
Cma14g01602 1101 MobiDBLite consensus disorder prediction 585 626 - -
Cma14g01602 1101 SUPERFAMILY CheY-like 432 574 IPR011006 -
Cma14g01602 1101 MobiDBLite consensus disorder prediction 608 626 - -
Cma14g01602 1101 Pfam Response regulator receiver domain 435 561 IPR001789 GO:0000160
Cma14g01602 1101 PANTHER TWO-COMPONENT RESPONSE REGULATOR 406 1039 - -
Cma14g01602 1101 Pfam Protein of unknown function (DUF789) 92 401 IPR008507 -
Cma14g01602 1101 SMART REC_2 433 563 IPR001789 GO:0000160
Cma14g01602 1101 MobiDBLite consensus disorder prediction 29 50 - -
Cma14g01602 1101 SUPERFAMILY Homeodomain-like 629 689 IPR009057 -
Cma14g01602 1101 ProSiteProfiles Response regulatory domain profile. 434 567 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01547 Cma14g01602 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01493 Cma-Chr4:7588079 Cma14g01602 Cma-Chr14:12043159 3.87E-80 dispersed
Cma04g02081 Cma-Chr4:14373690 Cma14g01602 Cma-Chr14:12043159 1.78E-29 dispersed
Cma06g01548 Cma-Chr6:9701157 Cma14g01602 Cma-Chr14:12043159 0 dispersed
Cma11g00478 Cma-Chr11:2318504 Cma14g01602 Cma-Chr14:12043159 4.30E-90 dispersed
Cma14g01602 Cma-Chr14:12043159 Cma15g00927 Cma-Chr15:4880285 2.63E-93 dispersed
Cma18g01000 Cma-Chr18:8409298 Cma14g01602 Cma-Chr14:12043159 2.82E-87 dispersed
Cma19g00442 Cma-Chr19:5383218 Cma14g01602 Cma-Chr14:12043159 1.22E-26 dispersed
Cma14g01602 Cma-Chr14:12043159 Cma17g00351 Cma-Chr17:1926092 0 wgd
Cma14g01602 Cma-Chr14:12043159 Cma06g01547 Cma-Chr6:9691269 0 wgd
Cma14g01602 Cma-Chr14:12043159 Cma08g01254 Cma-Chr8:7655266 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36306 PF05623 DUF789 7.80E-95 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01602 - K14491 csv:101209013 1033.86