Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01608 ATGAAATCTGCTTTCAAACAAGCCACTCTTCTTACCTGGCTATTGTTGGTAGAATTGGTTGCAGTTAACGCCAAATTCTTCGTCGGGACGAACCCGCCTGACCTCTTTCAAAAGATCAATTTCGGGAAGGACATTAGACATCGGAAGGAGACCGTGTTTAATGTTCTCAGTTTTGGTGCTAAACCTGATGGCAAGAAAGATAATACTCAGAGTTTTATGAAGACATGGGTTGCAGCATGCCACTCCAAGGGAGCTGCAAGAGTAGTTATTCCTGGGGGTACTTTTTTGATCAATCAAATAGTGTTTGCAGGGCCATGCGCCTCGACAAGTCCTATCGTCGTTCAAATCGATGCGACCTTAAAAGGAGGCATCGACCTGAGCAATTACGTCTCTAATGAATGGATATTGTTTGAGAAGATCAATGGCTTGATAATCACTGGCAGAGGTACTTTGGATGGACAAGGTGATGCTGTCTGGAAATACAACGACTGTGGTATGAATCCCACTTGCCAGAAGCTCCCTGTTAATTTGAAATTCAATGGCATCACAAATGTATTCATGAAAGGCATCAGTTCCATCAACAGCAAGGGGTTTCACATGTTCATCACGAACAGTGAGAACGTTCGGCTGAAAAAACTACACATAACGGCGCCAGACGACAGTCCCAACACTGATGGCATACATCTGAGCCGCTCCAACAAAGTGAAAATATCGAGATCAGTTATTTCCACTGGTGACGATTGCATCTCCCTGGGTCGAGGATCAATGAATGTCACCATCAACAAAATAACCTGCGGTCCTGGGCACGGTATCAGTGTTGGAAGCCTTGGAAAATATGATAATGAGGAGGACGTGCTCGGTGTCGTCATCAAGAACTGTACATTAATAAAAACAGATAATGGACTTCGGATCAAAACATGGCCAGACTCACCCCCGAGTGCAGCCTCGGGCATCCTATTCCAAGACATCAATATGATCGACGTCAAGAACCCCATCCTCATAGACCAAGAGTACAGCTGCTCAAAAACTAATTGCCAAAGGCCGCCATCACGAGTAAAAATCAGCGATGTTCATTTCATTAATGTCAAAGGATCCACAATCTCTTCAGTAGCAGTTCATCTCAAATGCAGTAAGCGGTTTCCATGCCAAAACATAGAGTTGTTTAACATCAATTTGAAATACAGTGGCCCTCCAAAGAAATCCTTGCCATTTGTTTCTACTTGTACCAATGCAAAAGTAGGCTACAGAGGAGTTCAATTTCCACCCCCTTGCAAATGA 1278 43.9 MKSAFKQATLLTWLLLVELVAVNAKFFVGTNPPDLFQKINFGKDIRHRKETVFNVLSFGAKPDGKKDNTQSFMKTWVAACHSKGAARVVIPGGTFLINQIVFAGPCASTSPIVVQIDATLKGGIDLSNYVSNEWILFEKINGLIITGRGTLDGQGDAVWKYNDCGMNPTCQKLPVNLKFNGITNVFMKGISSINSKGFHMFITNSENVRLKKLHITAPDDSPNTDGIHLSRSNKVKISRSVISTGDDCISLGRGSMNVTINKITCGPGHGISVGSLGKYDNEEDVLGVVIKNCTLIKTDNGLRIKTWPDSPPSAASGILFQDINMIDVKNPILIDQEYSCSKTNCQRPPSRVKISDVHFINVKGSTISSVAVHLKCSKRFPCQNIELFNINLKYSGPPKKSLPFVSTCTNAKVGYRGVQFPPPCK 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12084155 12085878 - CmaCh14G016080.1 Cma14g01608 308591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01608 425 Pfam Glycosyl hydrolases family 28 80 412 IPR000743 GO:0004650|GO:0005975
Cma14g01608 425 Gene3D - 42 419 IPR012334 -
Cma14g01608 425 PANTHER - 18 424 - -
Cma14g01608 425 SUPERFAMILY Pectin lyase-like 50 424 IPR011050 -
Cma14g01608 425 PANTHER EXOPOLYGALACTURONASE-LIKE 18 424 - -
Cma14g01608 425 SMART pbh1 315 336 IPR006626 -
Cma14g01608 425 SMART pbh1 349 371 IPR006626 -
Cma14g01608 425 SMART pbh1 285 306 IPR006626 -
Cma14g01608 425 SMART pbh1 255 275 IPR006626 -
Cma14g01608 425 SMART pbh1 232 253 IPR006626 -
Cma14g01608 425 SMART pbh1 205 231 IPR006626 -
Cma14g01608 425 ProSitePatterns Polygalacturonase active site. 262 275 IPR000743 GO:0004650|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01608 K01213 E3.2.1.67; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] - csv:101212922 738.799
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01540 Cma14g01608 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01608 Cma-Chr14:12084155 Cma17g01071 Cma-Chr17:7640231 1.49E-130 dispersed
Cma14g01608 Cma-Chr14:12084155 Cma06g01540 Cma-Chr6:9660334 2.63E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g149 . . . . . Bpe14g01113 . . . . Cma06g01540 Cma14g01608 . Car14g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01644 . . . . . . . . . . . . . Cla05g00673 . . Cco05g0746 . . . . . Chy06g00728 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000368 1 4 0 3 4 5 5 3 3 8 3 4 4 4 4 5 4 2 4 3 2 3 3 8 11 6 8 2 6 2 124
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01608 Cma_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0