Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01610 ATGACCCCGATGAAATTAGTAGCAGAAGTGGTGGCGGAGGCACGTCGGAGATCTCCACCTCCGTCAAAGCGATTAAAGCCCTTTGTCACCGACTACCAAGAAACTTGCATAAAATCACTCTCCGGAGTCAACACGAGCAACCCACGTGAGCTAATCAAGGTCGGATTCCAATCTAACATCAATGAACTCAAATCTGCCATTGCAAAATCCGCCACCCTAAAAGAATTCGCCTCCGATCCCAAGGCCAAACCAGCACTCGACGTTTGTAACGAGGTTGTAGAGTACGCAATTGACGATCTCATAATGTCATTTGATAGAATCAATATTAACAAAATTACTGATTACATCAAGGATCTTAAGATGTCGAAGGAAATGACCGCCAATGGACTTGGAATGATTACCTCCAACAAGAACTTTGCCGATGGAACACCCACATTCAAAACCGCTACCGTTGCGGTGGTTGGAACCAACTTCATTGCCAAGGACATGTGGTTCGAGAACTCGGCTGGACCAAAAAAACATCAAGCAGTAGCACTCCGAGTTCAATCCGACATGTCAATCTTTTACAATTGTCAAATGGACGGTTACCAAGATACACTTTACACTCACACCCATCGTCAATTCTATCGAGACTGCACCATCACTGGAACCATTGACTTCATCTTCGGTAATGCAGCCGTCGTCTTCCAAAATTGTAAGATTTTCGTGAGGAAACCATTGTCGAATCAACAATGCATCGTCACCGCTCAAGGGCGAAGCCAACGGAAGGAGCCCACCGCCATAATCCTGCAGAACTGCCTCATCTCCTCCACCCCTGACTACTTCCCTATCCGCCACACCTACAAGGCCTACCTTGGGCGCCCATGGAAGCAATACTCAAGAACCATCATTTTGCAATGCAAAATCGATGACTTAATCCAGCCTGAAGGGTGGCTTCCATGGATGGACGATTTTGCTCTCAATACATTGTTTTACTCCGAGTACAATTGTAGGGGAGCTGGCTCAAAGAAGGACAAACGAGTCAAGTGGAGGGGAATTAAGCAAATTACTCCCGAGCACGCTATCGATTTCACCGCTGGGTTATTTATTCGAGGTAATCCATGGATTAAGCCTACTGGAGTTCCGTACACTTCTGGTATGATGACATTGTTGCAAGAAGAATTGACCGTGTAA 1173 46.04 MTPMKLVAEVVAEARRRSPPPSKRLKPFVTDYQETCIKSLSGVNTSNPRELIKVGFQSNINELKSAIAKSATLKEFASDPKAKPALDVCNEVVEYAIDDLIMSFDRININKITDYIKDLKMSKEMTANGLGMITSNKNFADGTPTFKTATVAVVGTNFIAKDMWFENSAGPKKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHTHRQFYRDCTITGTIDFIFGNAAVVFQNCKIFVRKPLSNQQCIVTAQGRSQRKEPTAIILQNCLISSTPDYFPIRHTYKAYLGRPWKQYSRTIILQCKIDDLIQPEGWLPWMDDFALNTLFYSEYNCRGAGSKKDKRVKWRGIKQITPEHAIDFTAGLFIRGNPWIKPTGVPYTSGMMTLLQEELTV 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12094439 12096189 + CmaCh14G016100.1 Cma14g01610 308593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01610 390 ProSitePatterns Pectinesterase signature 2. 214 223 IPR033131 -
Cma14g01610 390 PANTHER PECTINESTERASE 132 382 - -
Cma14g01610 390 PANTHER PECTINESTERASE 30 120 - -
Cma14g01610 390 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 109 IPR035513 -
Cma14g01610 390 SMART PMEI_2 20 163 IPR006501 GO:0004857
Cma14g01610 390 CDD PMEI-like_3 29 126 - -
Cma14g01610 390 Gene3D - 106 380 IPR012334 -
Cma14g01610 390 PANTHER PECTINESTERASE 30 120 - -
Cma14g01610 390 SUPERFAMILY Pectin lyase-like 132 379 IPR011050 -
Cma14g01610 390 Pfam Plant invertase/pectin methylesterase inhibitor 30 119 IPR006501 GO:0004857
Cma14g01610 390 Pfam Pectinesterase 131 366 IPR000070 GO:0030599|GO:0042545
Cma14g01610 390 PANTHER PECTINESTERASE 132 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01610 Cma-Chr14:12094439 Cma06g01518 Cma-Chr6:9594721 3.80E-23 dispersed
Cma14g01610 Cma-Chr14:12094439 Cma06g01517 Cma-Chr6:9589741 3.16E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01610 K01051 - csv:101212686 440.654