Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01615 ATGTCGAACACGCCGAATGATATGTCACGATCGCATTTTGATGTCAGCAGAATTGCGATTGTACAGCACTCACTTCTCAGTAGCAACTGGGTTCTTATTATAAACGCAAATCTTTGGATACAGGACGGAAGTGTTTTAGATTCACGATCACATGATGCCAAATCCAAATGTTCATTTTGTGTTCTTCATGAGACCGCCATGTCCATAAGCTGCATGGCTACTGCTTTCTCCTCTTCTCCCACTCAATGCCCACCACCTGTTTGTGAAAATGCGCGACTGGACCTGAACTCCATAAGGGGTCTTGTTGTCTCTATCAATCAGTATATTCATGAATTCTTGAGCAATGCTGAGGCTAGAACTTCTGTCAAATTGAGATGCATATCCAAGCTAAGAAACCATAAACATGAGTATTTTGAATTCTTGGAACAATCCATCATTTCAAATCTTTACTGGGGTGTTGAGAACATTGAAGATACAGTTCAAACGAGCAGTTCTGAAGTGAGGGCCACTAAGCTTCAAACTGCTGAACAAATGCTTCAGGTCCCAGCACTGCTTGACGAGCATGGTGAGACGTCAGGAATGGATAATCGTTATTTAGTTTGCTGCTCTTACTTCTATCTTTCCCTGGTCAAGAACCTTCAAGGGGACGAGTGGCAGGTTGCTCTGCACTTCCTTCAATCCCTGCTGGTTTCTCCAAGATTGGTTCTCACCGAGTTTGCTCAAGAATTTTGCTACAGCCTTCTTCTTTCTTTTGCTACATGTTCGAGGCAAGAAAATTGTACCAGTATGAGGTCCAATTCTTGTGTAGAATTTGGCGAGGGTGATTTTGGTGAATCAACTGTAAGACAGGTAGCTAGAAAATACAAGGACTGGCTAATGTATTATCAGGTTATGTCTTACGGAGAGACTCACCAGTGGCAGCAGCAGGGAAGCAGCAGTATGTTTTCTTCTGAAGATGGATCACATTCCTTGCACGGCTCATTTTCCAGGATTGAAGATTCAAAGGCAATTGATTGCGGGCTTGCCAAGCCAACTGTTTCCCATTATGACATTATATCGCCACTTGATCATATTGATGCATTTCAAGATAAAATAAACACGTCGCAAGATGTTCCACGATGTGAAGAATTGGGGAATTCCGAAAAAAATTTGGGTCTCATCCCAGAACCTCAATTAAATGATGGGGGATTCTGGAGAGATTCAAGTACCAAATTCATTGGAGACATGTTGAAGGATTCCCATCTTGGTTCACCAACTTCATTATTCTCATCAATGAACGATTCCGAAAGTGACAGTGATTTTGAGGCAGGTATGAACTACACTAATCACTCTAAGAGAAGCGCACAAGAAGACGTGCCGGAAAACTTTTATCAGAAGCTGCGGTATGCTCGCTCCAAATCCGACACAGAGCAGAGTTTGATATCATTGACCAGTGCTTCTCTAAGTAGGGTGCAGGAACATTACATTGAAGCAAACATGATGAAATCCATTTCAAACAAATTCAATGATTACAAGTTATGTAGCGAAGAACAAAAAGACTTGGAACCTCAGATCCTCCAAAATTGTCTTGAAGATAGTGAACCAAAAGAATTGTTTGTAAACCCATGCAAATTACAGACTTTTGATAGTGCTTTACCTTTAGCGCTCGGTCAGGGTTCGACCTGTCAGATTAGTAAGCAGAATAGTGCTAAAGGGCAATTATATCACGCAAATAGCAGAAAAGATTCAAAGAGTGAAATATTGGGACTTGTAGAGAAAGCGATTTCAAGATTATGTTTCTCAGAAGGATTAGGAAACTACGATGACGAGTATGCCGTGGAAGTTTCAACGGTTTACAAAATGTTGAATAACAAAACGGGAGTACAATACACCATGTTAAAGGATTTGATAATGGATCAATTGGTGACAGGCATTTCAACTTCTAAAGAGGAAAAGGTTATAAGGGCATCAGTTTCTCTGCTCACAACTATAATTTCCGAGAACAATTCGGTTATAGAAGATATCAAGAAGAAGGGTTTGCAGTTATGTGATTTGGCTACTGCTCTAAAACAGAATGTTCATGAGGCTGCAATCCTTATCTACCTCATCAGTCCATCCCCAAGGGAAATCAAGTCCTTAGAGCTTCTACCTGTTCTGGTGGAGATCATAAGCACCTCAAGATGTTATAATACTTGGTCACCGCCACTTATGTTGACTCCTCCTGCAGCATCAATGATGATCATTGAAGTAATGGTAACTGCGTTTGACGAGGACACAAATAAGATGCATTTGGTAGAAATCAGCTCACCAAGTGTTCTATGTGGGCTTCTAGAAGTTGCAAGAACCAACAATGTGGAAGGATTGGTGTCTCTAGGCAGTATTCTTGTAAAATGTATGCAACTTGATGGAGAGTGCAGAAGCTATATATCAAAATTCATCTCAGTGGCTCCATTTCTCTGTCTCTTACAAAGTGATAAGAAGGAAGCAGTGCATATCACACTTCAAGTATTCAATGAAATCCTTCGTGTTCCTAGGTCTTCTGCCATTAGCTTGTTGCAAAGGATTAAGAATGAAGGGGGAAATGACATCATTCACATACTAATGCTTTGTGTCGATCATTTGCAAACTGAATATCAACTTTTGGCTGCAAATTTATTGATTCAATTACTTGTACTGGACAACGGTTCCACAACGAGCTTCTTGAAAGAAGAGGCTGTACATGTTCTTCTCAGGTCAGTGGCATGCGAAGAAACCTCTGCTATGCAGCTGTTGTCTGCATCGATTTTGTCAACTCTTGGTGGAACGTTTGCTTGGACAGGAGAACCATATACAGTTGCCTGGTTGCTTAAAAAAGTTGGTTTGAGTTCTGATCATCAGAACATGATCAAATCGTTCAATTGGCTAGACCAAAGCTTGCAGGATGCTGGCATGGACTCATGGTGCAGTCTGATGGCCAGAAACATCATCTGTATCGGGGAACCCGTCTTTCATGCTTTAGAAAAGGGTTTAAAGAGCAACATAAAGAAGGTTTCTAGGGACTGTTTGACAACAATTGCATGGCTTGGATGTGAGATTGCAAAGAGTCCAAGTAGCATTAGATGTTCTGCTTGTGAGATCTTACTCAGTAGAATTGAGCTGTTCTTGCATCCCGGAGTAGAACTCGAAGAAAGGCTTCTGGCATGTCTCTGCATCTTCAACTATACGTCTGGAAAAGGGATGCAAAATCTTACTAATTTCTCTGAAGGAGTTCGTGAGTCACTAAGACGTCTTTCACATATAACTTGGATGGCAGAAGAGTTGCATCAAGTAGCAGATTATCTTATGCCCAATAATTCACGAATTTCGTGCGTGCACACGCAAGTTCTAGAGCTGGGTTTCAACAGCAGTGGAGCTGTATGTGCCCTCATCTTTTACAAAGGTCTTCTTTTCGGTGGATACTCAGATGGTTCAATTAAGGTGTGGAACATCAAGGGACAATCGGCATCACTTCTATGGGACATAAAGAAACATAGAAAAGCAGTAACATGTTTTTCGCATTTTGAATCTGGGGAGAGTCTTCTAAGCGGATCTTCCGATAAAACTATTCGAGTTTGGAAAATGATCCAGGGAAGATTGGAGTGCATCGAAGTCATAGAGTCCAAGGAACAAATCCAACATGTAGGGGCATATGGACAAATAATCTTTGCAATTACACATGGCCATGGCTTGAAGATGATTGATGCATCAAGAACAACAAAAGTTCTTTTCAAGAGTAAGAATTTGAAGTGCATGAAGGTGGTTCAAGCAAGAGTTTACGCAGGCTGCACCGATTCGAGCATACAGGAGTTTTCTGTGACCAACAAATGGGAACAAGAGATCAAGTCACCTTCTAAAAGTTGGATGATGATGCACCACAAGGCTATCAACTCACTTGCTGTGTACAAGGACTGGCTCTTTTGTGCTAGTTCGATAGTTCAAGGCTCATTATTTCAGAACTGGAGAAGACACGAAAAGCCCAAAATGAATATTGTAACTAGTAAAGGAGACGTCGTGCAAGCAATAAGTGTCGTTGAAGATTTTGTGTACATAATCTGTAAATCTTCACTAAGCAGCATTCAGATATGGTTGAGAAAGGCACAGCTCAAAGTGGGGAGAGTTTCAGCTAGTAGCAGGATAACATGTCTGCTTACAGCCAATGACATGGTTCTCTGTGGCACAGAGACGGGCAAAATTAAGGGCTGGATCCCCATCTAG 4212 41.33 MSNTPNDMSRSHFDVSRIAIVQHSLLSSNWVLIINANLWIQDGSVLDSRSHDAKSKCSFCVLHETAMSISCMATAFSSSPTQCPPPVCENARLDLNSIRGLVVSINQYIHEFLSNAEARTSVKLRCISKLRNHKHEYFEFLEQSIISNLYWGVENIEDTVQTSSSEVRATKLQTAEQMLQVPALLDEHGETSGMDNRYLVCCSYFYLSLVKNLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLLSFATCSRQENCTSMRSNSCVEFGEGDFGESTVRQVARKYKDWLMYYQVMSYGETHQWQQQGSSSMFSSEDGSHSLHGSFSRIEDSKAIDCGLAKPTVSHYDIISPLDHIDAFQDKINTSQDVPRCEELGNSEKNLGLIPEPQLNDGGFWRDSSTKFIGDMLKDSHLGSPTSLFSSMNDSESDSDFEAGMNYTNHSKRSAQEDVPENFYQKLRYARSKSDTEQSLISLTSASLSRVQEHYIEANMMKSISNKFNDYKLCSEEQKDLEPQILQNCLEDSEPKELFVNPCKLQTFDSALPLALGQGSTCQISKQNSAKGQLYHANSRKDSKSEILGLVEKAISRLCFSEGLGNYDDEYAVEVSTVYKMLNNKTGVQYTMLKDLIMDQLVTGISTSKEEKVIRASVSLLTTIISENNSVIEDIKKKGLQLCDLATALKQNVHEAAILIYLISPSPREIKSLELLPVLVEIISTSRCYNTWSPPLMLTPPAASMMIIEVMVTAFDEDTNKMHLVEISSPSVLCGLLEVARTNNVEGLVSLGSILVKCMQLDGECRSYISKFISVAPFLCLLQSDKKEAVHITLQVFNEILRVPRSSAISLLQRIKNEGGNDIIHILMLCVDHLQTEYQLLAANLLIQLLVLDNGSTTSFLKEEAVHVLLRSVACEETSAMQLLSASILSTLGGTFAWTGEPYTVAWLLKKVGLSSDHQNMIKSFNWLDQSLQDAGMDSWCSLMARNIICIGEPVFHALEKGLKSNIKKVSRDCLTTIAWLGCEIAKSPSSIRCSACEILLSRIELFLHPGVELEERLLACLCIFNYTSGKGMQNLTNFSEGVRESLRRLSHITWMAEELHQVADYLMPNNSRISCVHTQVLELGFNSSGAVCALIFYKGLLFGGYSDGSIKVWNIKGQSASLLWDIKKHRKAVTCFSHFESGESLLSGSSDKTIRVWKMIQGRLECIEVIESKEQIQHVGAYGQIIFAITHGHGLKMIDASRTTKVLFKSKNLKCMKVVQARVYAGCTDSSIQEFSVTNKWEQEIKSPSKSWMMMHHKAINSLAVYKDWLFCASSIVQGSLFQNWRRHEKPKMNIVTSKGDVVQAISVVEDFVYIICKSSLSSIQIWLRKAQLKVGRVSASSRITCLLTANDMVLCGTETGKIKGWIPI 1403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12125704 12136301 + CmaCh14G016150.1 Cma14g01615 308598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01615 1403 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 77 1403 - -
Cma14g01615 1403 SMART WD40_4 1108 1148 IPR001680 GO:0005515
Cma14g01615 1403 SMART WD40_4 1153 1192 IPR001680 GO:0005515
Cma14g01615 1403 Gene3D - 1093 1402 IPR015943 GO:0005515
Cma14g01615 1403 PANTHER OS04G0584500 PROTEIN 77 1403 - -
Cma14g01615 1403 SUPERFAMILY WD40 repeat-like 1109 1399 IPR036322 GO:0005515
Cma14g01615 1403 SUPERFAMILY ARM repeat 633 1063 IPR016024 -
Cma14g01615 1403 ProSiteProfiles Trp-Asp (WD) repeats profile. 1160 1193 IPR001680 GO:0005515
Cma14g01615 1403 Pfam WD domain, G-beta repeat 1159 1192 IPR001680 GO:0005515
Cma14g01615 1403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1160 1193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01615 - - - csv:101205639 2310.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01546 Cma14g01615 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00622 Cma-Chr11:2992255 Cma14g01615 Cma-Chr14:12125704 1.72E-62 dispersed
Cma14g01615 Cma-Chr14:12125704 Cma18g00540 Cma-Chr18:3448454 6.37E-27 dispersed
Cma14g01615 Cma-Chr14:12125704 Cma11g00623 Cma-Chr11:2998384 5.91E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g130 . . . . . Bpe14g01110 . . . . Cma06g01546 Cma14g01615 Car06g01312 Car14g01434 . Cpe08g00178 Cpe03g01356 Bhi01g01055 Tan10g1044 . . . . . . . . . . . . . . Cone7ag0125 . . . . . Blo02g00490 Blo07g00162 Bda11g00515 Bda13g00204 . Bpe13g00679 . Bma06g01485 . . Cmo14g01652 . . . . . . . . . . . . . Cla05g00677 Cam05g0744 Cec05g0750 Cco05g0750 Clacu05g0736 Cmu05g0701 Cre05g0775 . Csa03g01495 . .
Vvi5g186 Blo01g00069 . . Bda08g00295 . . . Bma05g01030 . . . Cma14g01615 . Car14g01438 . . Cpe03g01357 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00830 . . . . . Cmo14g01653 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009269 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01615 Cma_Chr14 FPKM 4.796276 5.46324 7.606086 7.366688 39.860855 40.373463 43.664051 9.056491 8.302936 9.196587