Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01632 ATGCCCCTCAAATTCCATCGTTCTGCATCTTCTTCCTTCTCTTTGGCTTCATTCTTGTCGACACTCTGGATTTCGTGGCCGTCTTCTTCTTCATTGATTGGACCTAGACGTGCTTTGACGGGGAGCAGCCATTTGAAAATCGGCATTGTTTTTCTATTTCGAGTTTTTGTGTGCTGGATGATTCGATTGGTAAAGCTCATGGCCCCGTCAAGAAAGTCCAGAAGTGTTAATAAGCGGTTATCTTCTGCTAATGAGGCCTTCTCAAGTAAATACGTGGAAGATGCTAGCAAAAGCAAGCAGAAGAAGAGGAAATTTGCTGACCTGTTAGGGCCTCAATGGAGCAAGGATGAGGTTGAGCAGTTCTATGAAGCATATCGTAAATACGGAAAAGATTGGAAGAAGGTAGCTGCTGCAGTAAGGAACCGTTCTACAGAAATGGTCGAGGCCCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCACTACAGTGTACTGATAAATTGCCAGAGAGACAGTGAAAGTGAACAAGAAAGCAATGAGAATTCTGGAGCAAGAAGAAAACCTCAAAAGCGACTGCGTGGAAAGTCACAAAATAACAACTCTAAAGGATTGGATCCACATTTTGGAGATGCTTCACAATCACAGTCATTTCCAACAAATTATGGCTGCCTGTCATTGTTGAAGAAGAGGCGTTCTGGTATTAAACCACATGCTGTTGGGAAACGAACTCCACGCGTTCCTGTATCATATTCTTATGACAAAGATAGTAGAGAGAGGTTTCTTTCACCCTCAAGGCACAATAGCAAGACAAGGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCACAACGAGATGGTTCTCCACAACTTTCACAAACACCAAATCCAAAAATTGAAGGTCATGTACTTTCACCTACCCGAAATGACAGGATGCAAAGTGAATCAGGCATGATGAATACGAAGTTTCGATGTAGTGAAATGGATGAAGGTGGTTGCGAATTAAGCTTAGGAAGCACTGGTGCTGATAATGCGGACTATGACCTGGGGAAAAATTCTCGTGAGATTCAGAGAAAGGGTAAAAGGTACCATGGAAAGAAGCCAGAAGTTGAAGAAAGTATGTACAACCACTTGGATGACATCAAGGAAGCTTGTAGTGGGACTGAAGAGGGACAAAAATCAGGCAGTTTGAGGGGAAAACTTGAAACTGCGGATTTGGATGTAAAATCTGTGAGATCCTCTTTTAAAGGTCCGAGGAAAAGAAGTAAGAAAGCTCTATTTGGAGATGAATGTTCAGCATTTGATGCACTGCAAACTTTAGCTGATTTGTCTCTAATGATGCCTGACGCAAATGCTGAGACTGAGCCTTCTGCAAAGGTTAAAGAGGAAAATCTTGATGTCATGAACAAGTCCAAAATAAAAGGGAATCATTCAGTTGCTGGAGCTGAAATCTCTGCTCTCAAAACATCTAAAAAGGGAAAAGCTTTTGGCAATAATGTTGGTCCTATTCTGGAATCTGAGAGAATTCAAGGATCCAATAACGGTAATCGAAAAAGGAAACTGAAGTCTTCTCCATTTAAGATCTCAGCTAAAGATGAAGTTAACAGTGATTCTCGTGTCGGTGAAACTCTGAAAATCAAGGCTGCAGATGAAGCAAAAAGTTCTGTTGGTAAAGTTAAGCGTTCGCCTCATAATGCTGGGCTTGCAAAGTCTGGAAAATTATCAAAACCTCTAGATCATCACTTATCTTCCAGTACCGATCATAAAAGAGAAGATGGTGACTATGCTTTATCCACAGCACAAGTTCCATCAACTAATCCAATCAGCTTACCTACTGAAGTAAGGAGCAGGCGGAAGATGAACCTGTGGAAGTCACAAAGAGATTCAAAGATTTCAGATAACACTTTGATTGATCGATTTAATAGACCTGCTCAATCAATAGATGATAGACCAAATGATCTCAAGGAGCAGCATTCTAATTGTCTATCTTGGCATAAATTGCGTAGATGGTGTGTTTATGAGTGGTTCTATAGTGCAATTGATTTCCCATGGTTTGCCAAATGTGAGTTCGTAGAGTACTTAAATCACGTTGGATTAGGTCATATTCCTAGATTGACACGTGTCGAGTGGGGTGTTATTCGAAGTTCCCTTGGGAGGCCACGGAGATTCTCTGCTCAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCAATATAGGGAATCTGTTAGGAAACACTATGCTGAACTTTGTGCAGGCACAAGGGAAGGACTTCCAACTGATTTAGCTCGGCCATTATCTGTTGGACAGCGTGTTATTGCCATTCATCCAAAAACAAGAGAGATCCATGATGGAAGTGTACTTACTGTTGATTATAGCAGGTGTCGTGTTCAATTTGACCGGCCTGAACTTGGGGTTGAATTTGTGATGGATCTCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGTGTGACACTTGGTAAAATATTTGGGAACCTCAACGAGGTCAAGATTAATGGCTTACTGAATGAGGCGAAGATTGAAGAATATATGAAATCAACCAGTAATGATAAACTTGATAGCACTGATGGTTCTGTGTTTGTTTCCCCCATCAACAAATTAATTAAACAAGCAAAGGTTCACAAGGAAGTAAGAATCTGGGTGAGGGGTGGGGGCACTGGCTTCAAGGTTGACCTTGGGTGCTCTAATCTACAAGCTAAATTTGGGCTTAGTGAGACTGTCGGTATTCAACAGGAGGCAAGTTCCCAATCTTCTGCCCTTGCTCAAATTCAAGCAAAAGAAGCTGATGTTCATGCGCTTTCTGAATTGTCCCGTGCACTTAGCAAGAAGGAGGTGGTGGTGTCTGAATTGAAGCGCTTGAATGATGAGGTGTTGGAAAACCAAATAAATGGAGACAACTTGCTCAAGGATTCAGAGAACTTTAAGAAGCAGTATGCTGCTGTGCTATTACAGTTGAATGAAGTTTCCTCTGCTTTGTATTGCTTGAGGCAGCGCAATACATATCAAGGGACTTTACCATTGATGTTCCTCAAGCCAGTGCATGATATGGGCGACTCTTGCTCTCATGCTCAAGAACCCAGTTCCCATGTGGCTGAAATTGTGGGAAGTTCCAGAGCAAAGGCTCAAACATTGATCGATGAGGCAATGCAGGCAATTCTAGCTCTGAAAAAAGGAGAAAGTAATTTGGAGAATATTGAAGAAGCCATTGATTTTGTAAGTAATAGACTCTCAATGGATGATTTGGCCTTGCCAACTGTGAGATCAACAGCTGCAGATACTAGTAATTCCCCTCCAGTATCTCAGAATCATTTCAACGTGTGTACATCAAACCCATCTATTGCTGATCATGTAGTTGGTCCCAAGTCCAATGGCCTATCCGACAAGACTGAAGTGGAGATCCCTTCAGAACTTATTGCACACTGTGTAGCCACTTTACTCATGATTCAGAAATGCACAGAAAGACAGTTTCCACCATCTGATGTTGCTCAGGTATTGGATTCTGCCGTCAGTGGTTTGCAGCCTTGTTGTCCTCAGAACCTTCCACTATATGCGGAGATCCAGAAATGCATGGGAATTATAAGGAGCCAGATACTTGCGCTCATACCCACATAG 3729 41.81 MPLKFHRSASSSFSLASFLSTLWISWPSSSSLIGPRRALTGSSHLKIGIVFLFRVFVCWMIRLVKLMAPSRKSRSVNKRLSSANEAFSSKYVEDASKSKQKKRKFADLLGPQWSKDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLINCQRDSESEQESNENSGARRKPQKRLRGKSQNNNSKGLDPHFGDASQSQSFPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSRERFLSPSRHNSKTRVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPTRNDRMQSESGMMNTKFRCSEMDEGGCELSLGSTGADNADYDLGKNSREIQRKGKRYHGKKPEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLETADLDVKSVRSSFKGPRKRSKKALFGDECSAFDALQTLADLSLMMPDANAETEPSAKVKEENLDVMNKSKIKGNHSVAGAEISALKTSKKGKAFGNNVGPILESERIQGSNNGNRKRKLKSSPFKISAKDEVNSDSRVGETLKIKAADEAKSSVGKVKRSPHNAGLAKSGKLSKPLDHHLSSSTDHKREDGDYALSTAQVPSTNPISLPTEVRSRRKMNLWKSQRDSKISDNTLIDRFNRPAQSIDDRPNDLKEQHSNCLSWHKLRRWCVYEWFYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKQKLNQYRESVRKHYAELCAGTREGLPTDLARPLSVGQRVIAIHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMDLECMPLNPVENMPANLSRHGVTLGKIFGNLNEVKINGLLNEAKIEEYMKSTSNDKLDSTDGSVFVSPINKLIKQAKVHKEVRIWVRGGGTGFKVDLGCSNLQAKFGLSETVGIQQEASSQSSALAQIQAKEADVHALSELSRALSKKEVVVSELKRLNDEVLENQINGDNLLKDSENFKKQYAAVLLQLNEVSSALYCLRQRNTYQGTLPLMFLKPVHDMGDSCSHAQEPSSHVAEIVGSSRAKAQTLIDEAMQAILALKKGESNLENIEEAIDFVSNRLSMDDLALPTVRSTAADTSNSPPVSQNHFNVCTSNPSIADHVVGPKSNGLSDKTEVEIPSELIAHCVATLLMIQKCTERQFPPSDVAQVLDSAVSGLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT 1242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12206350 12220806 - CmaCh14G016320.1 Cma14g01632 308615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01632 1242 SMART sant 109 157 IPR001005 -
Cma14g01632 1242 Coils Coil 753 773 - -
Cma14g01632 1242 MobiDBLite consensus disorder prediction 251 293 - -
Cma14g01632 1242 MobiDBLite consensus disorder prediction 186 232 - -
Cma14g01632 1242 SUPERFAMILY Homeodomain-like 108 155 IPR009057 -
Cma14g01632 1242 Coils Coil 975 995 - -
Cma14g01632 1242 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 67 1242 IPR028306 -
Cma14g01632 1242 ProSiteProfiles SANT domain profile. 108 145 IPR017884 -
Cma14g01632 1242 MobiDBLite consensus disorder prediction 308 325 - -
Cma14g01632 1242 CDD SANT 113 147 IPR001005 -
Cma14g01632 1242 Gene3D - 60 165 - -
Cma14g01632 1242 MobiDBLite consensus disorder prediction 531 563 - -
Cma14g01632 1242 Coils Coil 1094 1114 - -
Cma14g01632 1242 Pfam Myb-like DNA-binding domain 112 147 IPR001005 -
Cma14g01632 1242 Pfam DIRP 700 801 IPR033471 -
Cma14g01632 1242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 147 IPR017930 -
Cma14g01632 1242 MobiDBLite consensus disorder prediction 267 293 - -
Cma14g01632 1242 MobiDBLite consensus disorder prediction 307 340 - -
Cma14g01632 1242 PANTHER LIN-9 67 1242 IPR010561 GO:0006351|GO:0017053
Cma14g01632 1242 MobiDBLite consensus disorder prediction 599 616 - -
Cma14g01632 1242 MobiDBLite consensus disorder prediction 210 232 - -
Cma14g01632 1242 MobiDBLite consensus disorder prediction 189 203 - -
Cma14g01632 1242 MobiDBLite consensus disorder prediction 575 616 - -
Cma14g01632 1242 SMART DIRP_2 701 802 IPR033471 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01632 - - - bhj:120080265 2052.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01485 Cma14g01632 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01069 Cma-Chr12:8446255 Cma14g01632 Cma-Chr14:12206350 1.11E-21 dispersed
Cma14g01632 Cma-Chr14:12206350 Cma06g01485 Cma-Chr6:9446426 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36308 PF06584 DIRP 3.80E-30 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01632 Cma_Chr14 FPKM 10.497722 10.795878 10.133163 9.752267 11.812463 12.380581 13.450437 20.695766 19.827227 21.203033