Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01634 ATGAACCCGTACGGTCACTTTATGGAACCCTCTCACTCCGATCCTTCGCCTGAATGGACCGCTTCCGGACCCGATACTGCTCATGGAGAGCCGCTTTGGCCTTTGGGATCGAGGGAGAGGGAATCGTACCCCGAAAGACCTGAAGAGACTGATTGTATATATTACCTACGCACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTAACGCGGTTTTAGGAGGTTCGAGACTTGCTGGAAGAGAGTATCCCGAACGAATAGGGCAGCCCGTGTGCCAGTACTATATGAGGACAGGAATGTGCAAATTTGGCGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAAGAGGTTCTCTTAGCCCCGTCTCACTGAATTTCTATGGCTATCCACTACGACCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATTGGCAGTGTAAATTTGGTGCTACGTGCAAATTTCATCACCCAGAACCGACTGGCTTGCAGTTTCGAGCACCATCACCTATCCAGGTTACACCAGTGCCTGCACCCTCTGTTTATCCTCCTGTGCAATCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCCGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCATTTTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCCCCCAGTGCCCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACACGTTTCACCTTCTGCACCTGTTTATGCTGGATCCTATCAGCCCATGCCATCTGCTGGTCCCTCTAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGCCAACCAGAGTGTCAATATTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCGCCAGAATTCGTTACTTCAAGTCCAGGTGTTGTCCTTAGCCAGCTAGGTCTTCCTCTACGCCCGGGTGCGCCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTCGACCACTCCATGGATCGACTTAGTTATAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCTTCAGAGTTGAAGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTACTAGTGGATTGGTTGGTTCAACTACATCGAGGACAGAAATGTATTCTCATTCAAGTGCTCAACGATCTTCCCAAACTTCTGGCCCGTCACAGAGCAGCACCTCCAGCACCACCAGTGTGGAAGGTCGTACTTGA 1428 49.23 MNPYGHFMEPSHSDPSPEWTASGPDTAHGEPLWPLGSRERESYPERPEETDCIYYLRTGFCGYGSRCRFNHPRERNAVLGGSRLAGREYPERIGQPVCQYYMRTGMCKFGASCKYHHPQQERGSLSPVSLNFYGYPLRPGEKECSYYLKNWQCKFGATCKFHHPEPTGLQFRAPSPIQVTPVPAPSVYPPVQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGIFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSAPVYAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPEFVTSSPGVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELKPEHFSGSRKDSNPSRMSSSMSTSTSGLVGSTTSRTEMYSHSSAQRSSQTSGPSQSSTSSTTSVEGRT 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12230592 12234782 + CmaCh14G016340.1 Cma14g01634 308617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01634 475 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Cma14g01634 475 Gene3D - 341 389 - -
Cma14g01634 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Cma14g01634 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872
Cma14g01634 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Cma14g01634 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 345 369 IPR000571 GO:0046872
Cma14g01634 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Cma14g01634 475 Gene3D - 286 331 - -
Cma14g01634 475 Gene3D - 42 123 - -
Cma14g01634 475 SUPERFAMILY CCCH zinc finger 300 323 IPR036855 GO:0046872
Cma14g01634 475 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Cma14g01634 475 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Cma14g01634 475 MobiDBLite consensus disorder prediction 275 299 - -
Cma14g01634 475 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Cma14g01634 475 PANTHER PROTEIN PHOSPHATASE RELATED 9 454 - -
Cma14g01634 475 SUPERFAMILY CCCH zinc finger 346 373 IPR036855 GO:0046872
Cma14g01634 475 MobiDBLite consensus disorder prediction 397 475 - -
Cma14g01634 475 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 9 454 - -
Cma14g01634 475 Gene3D - 124 171 - -
Cma14g01634 475 SUPERFAMILY CCCH zinc finger 94 122 IPR036855 GO:0046872
Cma14g01634 475 SUPERFAMILY CCCH zinc finger 47 74 IPR036855 GO:0046872
Cma14g01634 475 MobiDBLite consensus disorder prediction 278 293 - -
Cma14g01634 475 MobiDBLite consensus disorder prediction 418 475 - -
Cma14g01634 475 MobiDBLite consensus disorder prediction 1 44 - -
Cma14g01634 475 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Cma14g01634 475 ProSiteProfiles Zinc finger C3H1-type profile. 342 370 IPR000571 GO:0046872
Cma14g01634 475 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Cma14g01634 475 SMART c3hfinal6 342 369 IPR000571 GO:0046872
Cma14g01634 475 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Cma14g01634 475 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Cma14g01634 475 SMART c3hfinal6 46 73 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01483 Cma14g01634 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00830 Cma-Chr10:3873704 Cma14g01634 Cma-Chr14:12230592 8.60E-100 dispersed
Cma11g00942 Cma-Chr11:4951691 Cma14g01634 Cma-Chr14:12230592 6.49E-86 dispersed
Cma14g01634 Cma-Chr14:12230592 Cma13g00777 Cma-Chr13:6687078 1.87E-17 dispersed
Cma14g01634 Cma-Chr14:12230592 Cma06g01483 Cma-Chr6:9429815 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36310 PF00642 zf-CCCH 1.30E-07 CL0537 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01634 - - csv:101221033 805.438