Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01643 ATGGCCTCAGCCGAGCCGGAATCTGCCAAGGAGGCGCCGCTGCCTCCGCCCTCTACCGCTCCCCGTGGGGGAGTGAATTTGTCTCTGGTCGATTTCGGGCTGAGATTTGTGCTTTTTGCGGCGGCGGTGTCGAGTGTGGTGGTCATCGTCACCAGTAAACAAACCGTCGTCGGTAAGCTCCGGGGAGTCCCTCCGGGCTTCCCTGTCCAGGCCAAGTTTGACCACTCCCCTGCCTTCATATATTTCGTGGCTGCATTATCGGTGACGGCACTTTACGGTCTCGTTACGGCCCTCGCCTCCGTTTCCGTCATTGCTAAACCCAATCTCTCTACCAAGTTCTTGCTTCATTTTGCCGTCTGGGATACGTTGATATTGGGGGTGGTAGCCTCAGCCACAGGGGCTGCAGGTGGAGTCGCATACATAGGATTAAAAGGAAACTCGCACGTGCGATGGGACAAAGTGTGCTACGCATTCGACAAATTCTGCCGCCACATCGGCGGCGCTTTGGCGGCGTCACTTTTCGCCTCCGTCGTGTTGTTCTCGACTCCAGCATACTCCGTCCCGAAGCAAGCTCGGTTAGGGATTGAATCCATGGGTTTGCACCTTCTTCCCATTGATGCTGCCTTGAAGATTGCTTCTTCGCTTCAGGGGAATGAAATCATAGAAGCACTTGAAAGATGCAAGATCTCAGAGAGGCAAGTAAGCGTGAAATGGTGGAAGCTGGGAAGATGGTTTTATGGCTTCCGTATGAGAGACGAGCAACAAACTCGTCGAGTCTCTCTAGCAGCACTCGTAGCAGAAGAAGGGGAAGACGTTCTCGAGGTGCTTAGCCGGGGCGCTGTTAACGAGGTGCTTCGAGTTCAGCTTCAGCCCACTCAGCCATTTCCACCGCCGGTTCTACCTTCAAAAACTATGCTCCTTTGCTCCTCCGCCGGCGGCGGATTCAACCTTCTTTCGCCGGCGAATACAGCCAACTCAACCCGTCTTTCTTCTCATTTTGTCCATCGGAATCCGGTGAGTTCATTCTCTTTCTCTTTTCGATCTTCTTCTTTACATTTATCAGAGAACTTCAAATCCAATAGGGATAGACGGTGGTACCCCATTGTAGCTTCTTCGACCCCTGTCATTGAATCCACCCAATCTTCGTTTAGGACCAAAAACCCTAAAGATATTAACGTTTTGGTGGTGGGTTCTACAGGGTATATTGGGAATTTTGTGGTTAAGGAGCTGGTTAATAGAGGGTTCAATGTCATTGCTATTGCTAGGGAGAAGAGTGGAATTAGAGGTAGAAACAGTAAGGAACAAACTTCTAATGAGTTGAAAGGAGCTAATATTTGCTTTTCAGATGTAACCCGTTTGGATGCTTTGGAGAAATCTTTAAGGGATTTGGATATCCCTATTGATGTTGTGGTTTCTTGCCTTGCTAGCCGAACTGGCGGCATAAAGGACTCATGGAAGATCGATTATGAGGCCACAAAGAACAGTTTAGTAGCTGGAAGAAACCGTGGGGCTTCTCATTTTGTGTTGCTTTCTGCAATTTGTGTGCAGAAACCCCTTCTTGAATTCCAGCGTGCTAAGCTCAAATTTGAAGCTGAGCTTAAGGAAGAAGCAGGTAAAGAAGATAGTGGATTTAGTTATAGCATTGTGAGGCCAACTGCCTTCTTTAAGAGCTTAGGAGGTCAAGTTGAGTTGGTGAAAGATGGTAAGCCATATGTGATGTTTGGGGATGGGAAGTTGTGTTCCTGTAAGCCAATCAGTGAGCAGGATTTGGCTTCTTTTATTGCTGATTGTGTGTTGAGTGAAGATAAAATCAATCAGGTTTTGCCGATTGGTGGCCCGGGGAACGCGTTGACTCCGTTAGAACAGGGCGAGATCTTGTTTAGGCTGTTGGGGAAAGAACCAAATTTCTTGAAAGTACCAATTGGGATTATGGATTTTGCCATTGGAATTCTTGATTTCCTTGCTAAATTCTTTCCCGCCATGGAAGATGCAGCGGAGTACGGGAAAATTGGGAGATATTATGCAGCTGAGAGTATGTTGATCTTAGATCCTGAAACCGGAGAGTACAGTGCCGAAAAAACACCAAGTTATGGGAATGACACATTGGAAGACTTCTTTGAAAGGGTCCTTAGGGAAGGGATGGCTGGTCAAGAATTAGGTGAACAGACAATTTTTTGA 2178 47.8 MASAEPESAKEAPLPPPSTAPRGGVNLSLVDFGLRFVLFAAAVSSVVVIVTSKQTVVGKLRGVPPGFPVQAKFDHSPAFIYFVAALSVTALYGLVTALASVSVIAKPNLSTKFLLHFAVWDTLILGVVASATGAAGGVAYIGLKGNSHVRWDKVCYAFDKFCRHIGGALAASLFASVVLFSTPAYSVPKQARLGIESMGLHLLPIDAALKIASSLQGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTRRVSLAALVAEEGEDVLEVLSRGAVNEVLRVQLQPTQPFPPPVLPSKTMLLCSSAGGGFNLLSPANTANSTRLSSHFVHRNPVSSFSFSFRSSSLHLSENFKSNRDRRWYPIVASSTPVIESTQSSFRTKNPKDINVLVVGSTGYIGNFVVKELVNRGFNVIAIAREKSGIRGRNSKEQTSNELKGANICFSDVTRLDALEKSLRDLDIPIDVVVSCLASRTGGIKDSWKIDYEATKNSLVAGRNRGASHFVLLSAICVQKPLLEFQRAKLKFEAELKEEAGKEDSGFSYSIVRPTAFFKSLGGQVELVKDGKPYVMFGDGKLCSCKPISEQDLASFIADCVLSEDKINQVLPIGGPGNALTPLEQGEILFRLLGKEPNFLKVPIGIMDFAIGILDFLAKFFPAMEDAAEYGKIGRYYAAESMLILDPETGEYSAEKTPSYGNDTLEDFFERVLREGMAGQELGEQTIF 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12287005 12293952 + CmaCh14G016430.1 Cma14g01643 308626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01643 725 Gene3D - 393 697 - -
Cma14g01643 725 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 393 724 IPR036291 -
Cma14g01643 725 PANTHER DIVINYL CHLOROPHYLLIDE A 8-VINYL-REDUCTASE, CHLOROPLASTIC 324 725 IPR044201 GO:0016491
Cma14g01643 725 Pfam Casparian strip membrane protein domain 27 178 IPR006702 -
Cma14g01643 725 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 33 180 IPR006459 -
Cma14g01643 725 Pfam NAD(P)H-binding 397 599 IPR016040 -
Cma14g01643 725 CDD SDR_a5 392 614 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01643 K19073 DVR; divinyl chlorophyllide a 8-vinyl-reductase [EC:1.3.1.75] - csv:101218189 708.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00286 Cma-Chr2:1334713 Cma14g01643 Cma-Chr14:12287005 8.74E-10 dispersed
Cma14g01643 Cma-Chr14:12287005 Cma17g01127 Cma-Chr17:7862267 2.52E-15 dispersed
Cma20g00722 Cma-Chr20:3334387 Cma14g01643 Cma-Chr14:12287005 5.26E-09 dispersed
Cma20g00844 Cma-Chr20:4043610 Cma14g01643 Cma-Chr14:12287005 2.27E-06 dispersed
Cma06g01467 Cma-Chr6:9359829 Cma14g01643 Cma-Chr14:12287005 1.57E-31 transposed
Cma14g01643 Cma-Chr14:12287005 Cma06g01466 Cma-Chr6:9357939 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g356 . . . . . . . . . . . Cma14g01643 . Car14g01473 . . . . . . . . . . . . . . . . . . . . Cone4ag0173 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00614 Cam05g0675 Cec05g0685 Cco05g0680 Clacu05g0669 Cmu05g0637 Cre05g0709 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005829 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01643 Cma_Chr14 FPKM 29.045847 32.11768 14.618085 12.493085 46.085632 37.687057 49.107784 1.485771 1.442815 1.463921