Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g01645 | ATGTCTTTGAGGAGTATAATCCAGGAAATGAGATCCAGGTCCCGCCGTGTAGTTCAGGATGGTTCGACGGCTGAAGTCGGCGATGGTTTGGCGCAGAGCTGTTGGACTTACATGCCTCAGGAGTTGTTGAGAGAGGTTTTGGTTAGAATCGAGAGCTCTGAGAATGTTTGGCCTCTGCGGAAGAGCGTAGTGGCCTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCTGGCAGATTGACGTTTCCTATTTCTGTCAAGCAGGTTATGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGAAATCGATCTGCACAAACTTATTTCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTGCATGTTGATGACATGTCCAAGGCAAGTGGCACCTTCGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGCTTTCAAAAAGCCGCTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCAGTGGCTCACATCTCATATGAGTTGAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCAGCTATTGAACCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCTAAGCCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCATATGGATGATCAACCATCAGGATCTTCAACTGATCAGGAGGATCGGGTCTTAGTGCTTAGGAACAAGGCTGCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCCTCGGTGAAAAACTTTCAGTTAGTCGCTTCACCTGAAAACGGACTTGCTGGACCTGAACATGAAAAGATTATCCTTCAGTTTGGAAAAGTAGGAAAGGATATATTTACGATGGACTACAGATACCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGCAGTTTTGACACAAAGATAGCGTGTGAATGA | 1170 | 46.15 | MSLRSIIQEMRSRSRRVVQDGSTAEVGDGLAQSCWTYMPQELLREVLVRIESSENVWPLRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQVMPGPRDLLLHCFIKRNRSAQTYFLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHVDDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKLSKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSLSRIDFLPSLRFSWSKSNHMDDQPSGSSTDQEDRVLVLRNKAARWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE | 389 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 12300711 | 12304810 | - | CmaCh14G016450.1 | Cma14g01645 | 308628 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g01645 | 389 | Gene3D | Tubby Protein; Chain A | 95 | 389 | IPR025659 | - | |
Cma14g01645 | 389 | PANTHER | TUBBY-RELATED | 1 | 389 | - | - | |
Cma14g01645 | 389 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 1 | 389 | - | - | |
Cma14g01645 | 389 | Pfam | F-box domain | 38 | 82 | IPR001810 | GO:0005515 | |
Cma14g01645 | 389 | SUPERFAMILY | Tubby C-terminal domain-like | 84 | 389 | IPR025659 | - | |
Cma14g01645 | 389 | Pfam | Tub family | 100 | 384 | IPR000007 | - | |
Cma14g01645 | 389 | PRINTS | Tubby superfamily signature | 319 | 335 | IPR000007 | - | |
Cma14g01645 | 389 | PRINTS | Tubby superfamily signature | 367 | 389 | IPR000007 | - | |
Cma14g01645 | 389 | PRINTS | Tubby superfamily signature | 168 | 192 | IPR000007 | - | |
Cma14g01645 | 389 | PRINTS | Tubby superfamily signature | 217 | 244 | IPR000007 | - | |
Cma14g01645 | 389 | PRINTS | Tubby superfamily signature | 346 | 365 | IPR000007 | - | |
Cma14g01645 | 389 | PRINTS | Tubby superfamily signature | 301 | 318 | IPR000007 | - | |
Cma14g01645 | 389 | PRINTS | Tubby superfamily signature | 152 | 168 | IPR000007 | - | |
Cma14g01645 | 389 | ProSitePatterns | Tub family signature 2. | 374 | 389 | IPR018066 | - | |
Cma14g01645 | 389 | ProSitePatterns | Tub family signature 1. | 319 | 332 | IPR018066 | - | |
Cma14g01645 | 389 | SUPERFAMILY | F-box domain | 29 | 78 | IPR036047 | GO:0005515 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma08g01203 | Cma14g01645 | CCT | |
Cma14g01645 | Cma17g00306 | CCT | |
Cma08g01203 | Cma14g01645 | ECH | |
Cma14g01645 | Cma17g00306 | ECH | |
Cma06g01463 | Cma14g01645 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma14g01645 | Cma-Chr14:12300711 | Cma04g00503 | Cma-Chr4:2572388 | 5.90E-150 | dispersed | |
Cma14g01645 | Cma-Chr14:12300711 | Cma17g00306 | Cma-Chr17:1640574 | 0 | wgd | |
Cma14g01645 | Cma-Chr14:12300711 | Cma06g01463 | Cma-Chr6:9347211 | 0 | wgd | |
Cma14g01645 | Cma-Chr14:12300711 | Cma08g01203 | Cma-Chr8:7397977 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36312 | PF01167 | Tub | 9.40E-109 | CL0395 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g01645 | K19600 | - | csv:101217713 | 736.873 |