Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01645 ATGTCTTTGAGGAGTATAATCCAGGAAATGAGATCCAGGTCCCGCCGTGTAGTTCAGGATGGTTCGACGGCTGAAGTCGGCGATGGTTTGGCGCAGAGCTGTTGGACTTACATGCCTCAGGAGTTGTTGAGAGAGGTTTTGGTTAGAATCGAGAGCTCTGAGAATGTTTGGCCTCTGCGGAAGAGCGTAGTGGCCTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCTGGCAGATTGACGTTTCCTATTTCTGTCAAGCAGGTTATGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGAAATCGATCTGCACAAACTTATTTCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTGCATGTTGATGACATGTCCAAGGCAAGTGGCACCTTCGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGCTTTCAAAAAGCCGCTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCAGTGGCTCACATCTCATATGAGTTGAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCAGCTATTGAACCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCTAAGCCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCATATGGATGATCAACCATCAGGATCTTCAACTGATCAGGAGGATCGGGTCTTAGTGCTTAGGAACAAGGCTGCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCCTCGGTGAAAAACTTTCAGTTAGTCGCTTCACCTGAAAACGGACTTGCTGGACCTGAACATGAAAAGATTATCCTTCAGTTTGGAAAAGTAGGAAAGGATATATTTACGATGGACTACAGATACCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGCAGTTTTGACACAAAGATAGCGTGTGAATGA 1170 46.15 MSLRSIIQEMRSRSRRVVQDGSTAEVGDGLAQSCWTYMPQELLREVLVRIESSENVWPLRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQVMPGPRDLLLHCFIKRNRSAQTYFLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHVDDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKLSKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSLSRIDFLPSLRFSWSKSNHMDDQPSGSSTDQEDRVLVLRNKAARWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12300711 12304810 - CmaCh14G016450.1 Cma14g01645 308628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01645 389 Gene3D Tubby Protein; Chain A 95 389 IPR025659 -
Cma14g01645 389 PANTHER TUBBY-RELATED 1 389 - -
Cma14g01645 389 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 389 - -
Cma14g01645 389 Pfam F-box domain 38 82 IPR001810 GO:0005515
Cma14g01645 389 SUPERFAMILY Tubby C-terminal domain-like 84 389 IPR025659 -
Cma14g01645 389 Pfam Tub family 100 384 IPR000007 -
Cma14g01645 389 PRINTS Tubby superfamily signature 319 335 IPR000007 -
Cma14g01645 389 PRINTS Tubby superfamily signature 367 389 IPR000007 -
Cma14g01645 389 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Cma14g01645 389 PRINTS Tubby superfamily signature 217 244 IPR000007 -
Cma14g01645 389 PRINTS Tubby superfamily signature 346 365 IPR000007 -
Cma14g01645 389 PRINTS Tubby superfamily signature 301 318 IPR000007 -
Cma14g01645 389 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Cma14g01645 389 ProSitePatterns Tub family signature 2. 374 389 IPR018066 -
Cma14g01645 389 ProSitePatterns Tub family signature 1. 319 332 IPR018066 -
Cma14g01645 389 SUPERFAMILY F-box domain 29 78 IPR036047 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01203 Cma14g01645 CCT
Cma14g01645 Cma17g00306 CCT
Cma08g01203 Cma14g01645 ECH
Cma14g01645 Cma17g00306 ECH
Cma06g01463 Cma14g01645 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01645 Cma-Chr14:12300711 Cma04g00503 Cma-Chr4:2572388 5.90E-150 dispersed
Cma14g01645 Cma-Chr14:12300711 Cma17g00306 Cma-Chr17:1640574 0 wgd
Cma14g01645 Cma-Chr14:12300711 Cma06g01463 Cma-Chr6:9347211 0 wgd
Cma14g01645 Cma-Chr14:12300711 Cma08g01203 Cma-Chr8:7397977 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36312 PF01167 Tub 9.40E-109 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01645 K19600 - csv:101217713 736.873