Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01661 ATGGCATCAATGGTCGTTAAGCCGAGTTGTCATAGCACTATCAATCATGAGCCTTCCTCGATGACTGCCCAGGAAAAAGGGAGTAGGAATAAGAGGAAGTACAGAGCAGATCCACCTTTAGGTGATCTGAGTAAGATCGCCTCGTCATCTCAAGATGAATGCTCGAGTTATGAGTTTTCAGCTGAGAAATTTGAGAATAGTTCAAGTTTGGGGCAAACCAATGCGTGTGACCTTTGTAGCATTGGTCCAGAATTTTCTGCTGGATTGAAACTTGATCTTGGATTGTCCAATGGAGGCTCTTCTGACGTTGGGCTAAACTGGCCAAGTGGGGAATCAGAAGTTGATGAGTTCCAAGATGTTGATTGGAGTGACCTTACAGAAGCTCAGCTCGAAGAACTAGTTTTAAATAATTTGGACACAATATTCAAGAGTGCAATCAAGAAAATCATTGCTTCTGGATACACTGAAGAGGTTTCGATAAAAGCTGTGTCGAGGTCTGGCATTTGTTTTGGTTGTAAAGATACACTATCAAATATAGTGGATAACACCTTAGCTTTGCTTAAAAGTGACCAAGAAATTGATCATTCAAGGGAACACTATTTTGAAGATTTACAGCAACTAGAAAAATATATTTTAGCCGAATTAGTTTGTGTTCTACGAGAGGTTAGGCCTTTCTTCAGCACTGGCGATGCAATGTGGTGGTTATTGATTAGTGACATGAATGTATCTCTAGCATGTGCAGTGGATAATGACCCATTTGATGCACTTGTCTGTGATGGGACTTCGAATGAGAGCTCGTGTGACTCTATCTCACAGTTAAAACCGGAAGCTAAAGGCTCTGAGATGAATCTACCTAAGCCTGTTAAGCCAATTTCTCCAATCAGCTGTGCTCATGCTTCTCAATCTGATGGACCAGCCACTCTAGGAGTTCCTAGTATTGCAAAACCAAAGGACCCATTATTTTCAAGTGGACCATTATCAGATAAAGAATTGCAAAATTCCACCTCTGCTACGGCTGAGGAATCATATAGTGTGGCCGGAAACCCTCAAACTTCTGTGTCCGAAGAAAAAGTTGGGAGCAGTAGAAAGGGTCATTCTAATATATCTAAGAGAGAATACATGCTACGACAAAAGGCACTTCATGTGGATAAAAACTTTCGAACACATGGAACTAAGAGCTCATCAAGAGCTGGAAAGTTGTCTGGTTTGGGGGGTTTAACGTTGGACAAGAAACTAAAATCTGTTTCAGGCTCCACTTCAGTTAACTTTAAGAACGCTTCACTGAAAATAAGCAAATCCATGGGAATTGATGTGCCCCAAGACAATGGGAATGATAATGTTTCCACCATCGACATTCCTTCTTCCTCTCCATCATTTAACTTGGAAAACATTAACACCGTTTTTCCTTTTTCTAAGACCAATGTATCTCCAATGCCCAGTCCTAGTTCACCCCCTGCATTACCTGCAGCTAATACTTCTGGGCTACCAACAACTGATATTGATCTTTCTCTTTCTTTGCCCACTAAAAGCAATCAGCCCTCAGTGCCTATCAGCTGCAACGCTGAGTCTCCGACTAATAGTTTTGTTGAGAGGCCTTATGAAAAGTCCCTTGAACAGTGGTTTCCGAAGGATAAGAAGGATGAGATGGTTTTGAAGCTAGTGCCAAGGGCTCGGGAATTACAAAGTCAGCTGCAAGAGTGGACGGAGTGGGCAAATCAAAAGGTCATGCAGGCTGCCAGGAGGCTAAGTAAGGACAAGGCTGAACTCAAGAATTTGAAACAAGAAAAGGATGAAGTTGAACGGCTGAAAAAGGAGAAGCAAACTCTGGAAGAAAATACCATGAAGAAACTTTCTGAGATGGAACATGCATTGTGCAAGGCTAGTGGTCAGGTTGAACTTGCTAACTCTGCTGTTAGGAGGCTTGAGATGGAGAATGCTGCACTACGGCAGGAGATGGAGGTTGCAAAATTACGTGCTGCAGAATCAGCTGCTAATTATCACGAGGTTTCTAAGAGGGAAAAGAGAACACTGATGAAAGTTCAATCTTGGGAGAAGCAGAAAATGTTGTTTCAGGAAGAACTCACTGCCGAAAAGCGGAAATTGAAACAACTAATACAGGAACTTGAGCATGCCAGGGATCTGCGGGAGCAACTTGAGGGTCGGTGGAAGTTGGAGGAGAGAGCAAAAGATGAGCTGCTCATGAAGGCTGCTTCATTGAGAAAGGAGAGAGAACAAATCGAAGATTCAGTGAAAGCAAAGGAGGATACAATTAAATTGAAAGCAGAAAACAATCTAATAAAATACAAAGACGATATCCAAAAGCTTGAAAAAGAAATCTATGCGTTGAGACTTAAGACTGATTCTTCAAGAATTGCAGCTCTTAAGAGAGGCATTGACGGAAGTTATGCCAGTAGACTTACAGATACCAGACATAGCACAGATCACAAAGAGTCCTCGACCCCGAATGCCTTGGAATCGATGAAGGATCTTTACGAGTACTCTGGAACTGGGGGTGTGAAGCGGGAACGGGAGTGTGTGATGTGCCTTTCAGAGGAGATGTCAGTAGTTTTTCTTCCATGCGCCCATCAGGTGGTGTGCACAACCTGCAATGAACTACATGAAAAACAGGGTATGAAAGATTGCCCTTCTTGTAGGAGCCCAATACAGCGGCGTATTCCAGTCCGTTGTGTTCGCTCGTAA 2700 42.74 MASMVVKPSCHSTINHEPSSMTAQEKGSRNKRKYRADPPLGDLSKIASSSQDECSSYEFSAEKFENSSSLGQTNACDLCSIGPEFSAGLKLDLGLSNGGSSDVGLNWPSGESEVDEFQDVDWSDLTEAQLEELVLNNLDTIFKSAIKKIIASGYTEEVSIKAVSRSGICFGCKDTLSNIVDNTLALLKSDQEIDHSREHYFEDLQQLEKYILAELVCVLREVRPFFSTGDAMWWLLISDMNVSLACAVDNDPFDALVCDGTSNESSCDSISQLKPEAKGSEMNLPKPVKPISPISCAHASQSDGPATLGVPSIAKPKDPLFSSGPLSDKELQNSTSATAEESYSVAGNPQTSVSEEKVGSSRKGHSNISKREYMLRQKALHVDKNFRTHGTKSSSRAGKLSGLGGLTLDKKLKSVSGSTSVNFKNASLKISKSMGIDVPQDNGNDNVSTIDIPSSSPSFNLENINTVFPFSKTNVSPMPSPSSPPALPAANTSGLPTTDIDLSLSLPTKSNQPSVPISCNAESPTNSFVERPYEKSLEQWFPKDKKDEMVLKLVPRARELQSQLQEWTEWANQKVMQAARRLSKDKAELKNLKQEKDEVERLKKEKQTLEENTMKKLSEMEHALCKASGQVELANSAVRRLEMENAALRQEMEVAKLRAAESAANYHEVSKREKRTLMKVQSWEKQKMLFQEELTAEKRKLKQLIQELEHARDLREQLEGRWKLEERAKDELLMKAASLRKEREQIEDSVKAKEDTIKLKAENNLIKYKDDIQKLEKEIYALRLKTDSSRIAALKRGIDGSYASRLTDTRHSTDHKESSTPNALESMKDLYEYSGTGGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRCVRS 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12428989 12433426 - CmaCh14G016610.1 Cma14g01661 308644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01661 899 Pfam Zinc finger, C3HC4 type (RING finger) 842 890 - -
Cma14g01661 899 Coils Coil 572 619 - -
Cma14g01661 899 MobiDBLite consensus disorder prediction 1 25 - -
Cma14g01661 899 Pfam Family of unknown function (DUF6592) 137 248 IPR046527 -
Cma14g01661 899 MobiDBLite consensus disorder prediction 1 47 - -
Cma14g01661 899 PANTHER OS05G0141500 PROTEIN 13 896 IPR046934 -
Cma14g01661 899 SUPERFAMILY RING/U-box 844 891 - -
Cma14g01661 899 PANTHER OS05G0141500 PROTEIN 13 896 - -
Cma14g01661 899 MobiDBLite consensus disorder prediction 326 357 - -
Cma14g01661 899 Coils Coil 631 665 - -
Cma14g01661 899 ProSiteProfiles Zinc finger RING-type profile. 845 885 IPR001841 -
Cma14g01661 899 MobiDBLite consensus disorder prediction 475 498 - -
Cma14g01661 899 Coils Coil 758 785 - -
Cma14g01661 899 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 817 895 IPR013083 -
Cma14g01661 899 Coils Coil 729 756 - -
Cma14g01661 899 MobiDBLite consensus disorder prediction 293 371 - -
Cma14g01661 899 Coils Coil 680 721 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01661 - - - csv:101214366 1477.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01661 Cma-Chr14:12428989 Cma14g01676 Cma-Chr14:12503100 9.07E-06 dispersed
Cma06g00848 Cma-Chr6:4712010 Cma14g01661 Cma-Chr14:12428989 9.07E-20 transposed
Cma16g01147 Cma-Chr16:8819354 Cma14g01661 Cma-Chr14:12428989 3.66E-23 transposed
Cma14g01661 Cma-Chr14:12428989 Cma06g01447 Cma-Chr6:9269337 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g397 . . . . . Bpe14g01163 . . . . . Cma14g01661 Car06g01249 Car14g01494 . Cpe08g00228 Cpe03g01402 Bhi01g00890 . . . Hepe05g1501 . Lcy11g1476 . . . . . . . . . . . Lsi05g01477 . . Cme06g00668 . . . . . Bpe13g00635 . Bma06g01529 . . Cmo14g01705 . . . . . . . . . . . . . Cla05g00597 Cam05g0657 Cec05g0664 Cco05g0661 Clacu05g0650 Cmu05g0619 Cre05g0688 . Csa03g01393 Chy06g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004013 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01661 Cma_Chr14 FPKM 12.597672 13.663876 15.875709 15.238597 11.39177 11.017522 12.469819 13.704089 11.943876 12.836062