Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01664 ATGTCGTATCAGGGTTTCGGCAAGGCTTCAGGACCAAGCGCACCGCCGAAACTGCAACATTCTTTCGGAAATTCAGCAATTCCTGATTCAGTTTCTCCTCTACGCGCTTCTAGTCAACATGAGGCATTCGGCAGTAGAGTTCAATCACATTCTATGGCTTTTCAAACCCCTGGTACTGCTTCAAGTCTTCATCATCAATACTATAGGCCTGTTTCATCTTCCCCTATATTTGAGGAACAGCCAAAGGTGCGAGGAATGCTTCCAAACTCACAAGCTTATCAAGACCAAGCCCTTTCAGAAAGATCTCATGATCATGATACAAATATTCAAGCACCAAAAAGAACCGAATCTCCTGAGAAACCATTTGTGAGTAATCTTCGGTCTGCACAGACTAATTTGTTAAGGCCTTCTACCTCTCCTCCTAGACCATTTTCTTGGTCAAATACTCAAGAAGCTGCGGGCTCCATGAGGAATATTAATACTGAATCCGTAGTTACTGAGCCCACTGGTGTCCTGGTTTCCAAAAGAACAAAATCGCCTACTTTATCATCATCAGATCAAGTCTCTGGTGGCAATTCTGATCCTACTCCTGATGACACTGAACGAGAAAGGTTAGCCAAGGCAAAGAGACTTGCGCGCTTTAAGGTGGAATTAGTTGAAGTTGCACATAGCAAATTGGGTAGTGTGGATGCAAGGGATAATTCAAATAGAAATGAACATTCAACAACAGAAAGGGACAAATGCATGTCAAATCAATCTTTGGAGTCATCAACAAATTTGGCTCAAGGGAATTCTATGCCTGATTATGAAGCTTTGGAATCTTCAAGCATAATAATTGGACTCTGCCCAGATATGTGTCCAGAGTCAGAGAGGGCTGAGCGAGAAAGGAAAGGTGATCTCGACCATTATGAGAGGTTGGATGGGGATAGAAACCAAACTAGCAAATTGCTTGCAGTTAAGAAGTATACCAGAACAGCTGAGCGGGAAGCTAATCTTATAAGGCCTATGCCAGTTTTGCTGAAAACAATCAAATATTTGCTTGAGTTGTTAAGTCAACCTTATGGTGAAAAGTTTTTAGGCATATATAACTTTTTATGGGATAGGATGCGAGCAATTCGCATGGATCTGAGAATGCAACATCTTTTTAATGAAAATGCCATTACGATGCTGGAACAAATGATTCGTCTTCACATAATTGCAATGCACGAGTTATGCGAATTCTCAAAAGGAGAAGGATTTGCTGAGGGATTTGATGCTCACCTTAACATTGAACAAATGAACAAAACATCAGTAGAATTGTTTCAAATGTATGATGATCACAGAAAGAGAGGCATTATTGTGCCCTCTGAAAAAGAATTTCGAGGTTATTATGCACTTCTCAAGCTGGACAAACATCCTGGATATAAAGTTGAACCTGCAGAGCTCTCACTTGATCTTGCAAAGATGACTCCTGAGATGCGACAGACTGCAGAAGTCAAATTTGCCCGTGATGTTGCCAGAGCTTGTAGGACAAGTAATTTTATTGCATTCTTTCGGCTTGTGAGGAAAGCAAGTTATTTACAAGCATGCTTAATGCATGCTCACTTTGCGAAGTTGCGAACGCAGGCTCTTGCATCATTGCACTCTGGTGTTCAGAATAACCAAGGACTACCAATTTCTCATGTCCGTAAGTGGATTGGGATGGAGGAAGAAGATATTGAAGGCCTTTTAGAATATCATGGTTTTTCGATTAAGGTATTTGAAGAGCCTTATATGGTTCGAGAAGGTCCATTTCTTAATAGTGACAAGGACTTTGCTACCAAGTGTTCAAAACTTGTTCACATGAAGAGGTCAGGAATGATAGTAACCGATGTCTCACCGAAGAGTAGAAATGAATACTTGATCACTGGTGCTACTAAACAGACCCCATTGACATGGAAGAGTAAAAATGAGTACTTGAGCACTAGTGCTATTAAACAGATTCCATCGAAAATGACTAAGAAGCAACTACCGATATTCTCTTTTGAAAAGATTACTTCTCCCCGTCCTGTATCACCTGAAAAAGAAAAAGAAAGTTCCGTGAATGAAATAGATGAAGACATGGTTGAATTTGATGATCCGCTGATTCCAATTGATCCCAAGCAAGTGCAACCAATGATTGAAACATCAGAAGTTGGTCAATTGCATGAATATAACCATGGGGTGAATGGTGCTCTCCTTCTACAATCTGGTCCCAGATCATGTGAACCATTGAGGACTGAAGTTAAATTTGTAGGCAATCAAGGTTATGATGGTGTTTTCGTGACCTCTCCAGTTAGAAACATTTCTACTGGAATGGGAATGTCTTTACCACTTGTATCAGATGCATCGCCTCAAAAGATATCTGTTTGTGGATATAATGATAATGCAATTGGAAGCGTCGAACCACAGAGCATAGTCAACAATATGATGGAAGATGAAGAAATTTTGTATGCTACTCAGGAAAATAAACATGATATTGTTACAGAAGGTTGTCCGGATGAAGAAATTGCAGATGCAAGACTCAAATTGATCTTAAGGTTATGGAGGCGCCGAGCTGTAAGGAGAAAACAATTACGTGAACAAAGATTATTAGCCGCTAAAGCTGCATTTGATACATTGTCTGTGGGACCACCAGTCCAATTGAAAAACCATAAAATTAGAAGTGTTGGTGTTTTCGACATTGATCACATCCTGAGAGAAAGATGGAAAAGGCAGAAACTGTCATGCTCCGTAGTTAATGTTTCAGAAGTAGTAGCTAGCAGTTTGGGCGGAAAGAATGTGAATGGGAAGTGCATTTGCTGGAAACTTGTTGTCTGCTCTCAGATGGACAGTGCTGGTGATCTCGTTCAGGGTACAGGAGATTCTCATATTTCAGCAGGTTCTTGGTTGCTTTCGAAGCTCATGCCCTCGGAGGCTAATGATCTAGTTTTCTCATCTTCTTTTCTTTCCATTTGGAAGAGTTGGCTTTCAGGCAAAACGGGTGTGGACTCAAGTTGTTTCTTATCCGTAGTTAAACATGCAAATTTTGATAATCTTCCAGAGACTGTGAGGGGGGCAAGTGCTATCTTATTTGTTGCAACTCAGAGCACCCCTCTGGATCTTCAAAGAGTCCAACTCCACAAGCTGCTGTTGTCAATACCTTCGGGTTCTTGTTTGCCCCTTCTGATTCTGAGTGATTTACACGATGAGGCCTCGGCATCATCCATGCTGGTGAACAAACTCGGCTTATATGATATCGATAAATCAAGGATATGCAGTTTTCAGGTCATTTCACTCTTAGATAACCCTCATTTGAGGCACTCGGGGTTTTTGAGCGATGAGAAACTCAAGGAAGGATTGAAGTGGCTGGCAAATGAATCACCATCACAACCTGTTCTGCACAGCGTCAAAGTGCTTGACCTGATTATTACCCACTTAGATTTGTCTATGGAGATGCTTGATTCTATGAATGAAAAAGACGTTTCTCCGAACCAATGTATCTCAGCATTTAACCTAGCCTTGGATCAGTCACTTGCGGATATTACAGCTGCTGTTAAGGCAAATCCTTCGAACTGGCCTTGCCCCGAGATAGCTTCGTTGGTGTCTTGTAATGAGCACGGAATTATAACCAATGCTTTGCCTCCTGTAGGATGGAGTTCGGCAGAAAATGTCGAACCACTTAAGAAGGCTTTGATGGACCTTAAGCTTCCAACTTTTCCTGATATATCATGGTTGACTAAAGGCTCAAATATGGCAAAAGAGATACCTACCTTAAGAGATAACCTAGAAAATTGCTTGAGTTGTTATCTGACTCAAACTAGTAAGATCATGGAACAACAACTTGCAATGGAAGAGGCTCATATTATGCTCCAAAAATGTGCTAAACTTGAGCTCCATAAGTTCTGCTATTTCATCGTTCCACATTGGGTGAAGATTTTTAGACGGATTTCCAATTGGAGGCTGAGGTATTTTGCTGGCAGGTCCTCTTATGTTAATATTGTGGATTGCTGCCATGGAGCATCTGTAGTGAGTAGCGTTAGGCTTGAAAGTAGGGAACCTCCATCTTATACTCCTAACCAACCACTTTTAGATGAAGTGATTGAAGTAGCTTGCAGTTCCCTCTCAATTGATGAGGGGAGACCATTGTCAGAAGCTCACCAGCCTCTTGCTGCCATAACGTCAAATAGTAGGCCTTGTGAGCTTATCGTTACAACAATAAATTTTGCCGATGATGGTAGCAACAACACCCGACAGGTCGGTTTTGTTAGTTCTGACAGTGTTGTGCCTAATTCGGATCGGGAACTAAATTGTACAGGTAAAGAACTTGTTGCCAGTGACACAAGGTATTCAGAAGCAGCAAAACTAAAAAAGCTGTTGGATCAGTGTGACAAACGACAGGATGCCATAGAAAAAATATTGTCTATCTATTACTAA 4413 41.15 MSYQGFGKASGPSAPPKLQHSFGNSAIPDSVSPLRASSQHEAFGSRVQSHSMAFQTPGTASSLHHQYYRPVSSSPIFEEQPKVRGMLPNSQAYQDQALSERSHDHDTNIQAPKRTESPEKPFVSNLRSAQTNLLRPSTSPPRPFSWSNTQEAAGSMRNINTESVVTEPTGVLVSKRTKSPTLSSSDQVSGGNSDPTPDDTERERLAKAKRLARFKVELVEVAHSKLGSVDARDNSNRNEHSTTERDKCMSNQSLESSTNLAQGNSMPDYEALESSSIIIGLCPDMCPESERAERERKGDLDHYERLDGDRNQTSKLLAVKKYTRTAEREANLIRPMPVLLKTIKYLLELLSQPYGEKFLGIYNFLWDRMRAIRMDLRMQHLFNENAITMLEQMIRLHIIAMHELCEFSKGEGFAEGFDAHLNIEQMNKTSVELFQMYDDHRKRGIIVPSEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEMRQTAEVKFARDVARACRTSNFIAFFRLVRKASYLQACLMHAHFAKLRTQALASLHSGVQNNQGLPISHVRKWIGMEEEDIEGLLEYHGFSIKVFEEPYMVREGPFLNSDKDFATKCSKLVHMKRSGMIVTDVSPKSRNEYLITGATKQTPLTWKSKNEYLSTSAIKQIPSKMTKKQLPIFSFEKITSPRPVSPEKEKESSVNEIDEDMVEFDDPLIPIDPKQVQPMIETSEVGQLHEYNHGVNGALLLQSGPRSCEPLRTEVKFVGNQGYDGVFVTSPVRNISTGMGMSLPLVSDASPQKISVCGYNDNAIGSVEPQSIVNNMMEDEEILYATQENKHDIVTEGCPDEEIADARLKLILRLWRRRAVRRKQLREQRLLAAKAAFDTLSVGPPVQLKNHKIRSVGVFDIDHILRERWKRQKLSCSVVNVSEVVASSLGGKNVNGKCICWKLVVCSQMDSAGDLVQGTGDSHISAGSWLLSKLMPSEANDLVFSSSFLSIWKSWLSGKTGVDSSCFLSVVKHANFDNLPETVRGASAILFVATQSTPLDLQRVQLHKLLLSIPSGSCLPLLILSDLHDEASASSMLVNKLGLYDIDKSRICSFQVISLLDNPHLRHSGFLSDEKLKEGLKWLANESPSQPVLHSVKVLDLIITHLDLSMEMLDSMNEKDVSPNQCISAFNLALDQSLADITAAVKANPSNWPCPEIASLVSCNEHGIITNALPPVGWSSAENVEPLKKALMDLKLPTFPDISWLTKGSNMAKEIPTLRDNLENCLSCYLTQTSKIMEQQLAMEEAHIMLQKCAKLELHKFCYFIVPHWVKIFRRISNWRLRYFAGRSSYVNIVDCCHGASVVSSVRLESREPPSYTPNQPLLDEVIEVACSSLSIDEGRPLSEAHQPLAAITSNSRPCELIVTTINFADDGSNNTRQVGFVSSDSVVPNSDRELNCTGKELVASDTRYSEAAKLKKLLDQCDKRQDAIEKILSIYY 1470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12442033 12453038 + CmaCh14G016640.1 Cma14g01664 308647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01664 1470 Pfam SAC3/GANP family 285 578 IPR005062 -
Cma14g01664 1470 Pfam MCM3AP domain of GANP 1037 1232 IPR031907 -
Cma14g01664 1470 MobiDBLite consensus disorder prediction 98 113 - -
Cma14g01664 1470 MobiDBLite consensus disorder prediction 95 202 - -
Cma14g01664 1470 MobiDBLite consensus disorder prediction 121 195 - -
Cma14g01664 1470 MobiDBLite consensus disorder prediction 247 266 - -
Cma14g01664 1470 PANTHER SAC3 FAMILY PROTEIN B 79 1470 - -
Cma14g01664 1470 MobiDBLite consensus disorder prediction 17 61 - -
Cma14g01664 1470 MobiDBLite consensus disorder prediction 229 266 - -
Cma14g01664 1470 PANTHER 80 KDA MCM3-ASSOCIATED PROTEIN 79 1470 IPR045107 -
Cma14g01664 1470 MobiDBLite consensus disorder prediction 229 246 - -
Cma14g01664 1470 ProSiteProfiles PCI domain profile. 422 616 IPR000717 -
Cma14g01664 1470 Gene3D - 328 630 - -
Cma14g01664 1470 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01664 K23719 SAC3; nuclear mRNA export protein SAC3 - csv:101205161 2118.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01664 Cma-Chr14:12442033 Cma04g01286 Cma-Chr4:6551757 3.36E-45 dispersed
Cma14g01664 Cma-Chr14:12442033 Cma04g01225 Cma-Chr4:6244583 8.06E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g400 . . . . . . . . . . . Cma14g01664 . Car14g01497 Sed02g1285 . Cpe03g01404 Bhi01g00884 Tan10g0912 Cmetu10g1725 . Hepe05g1504 . Lcy11g1479 . . . . . . . . . Cone7ag0196 Cone4ag0189 Lsi05g01473 . . Cme06g00665 Blo02g00561 . . . . . . . . . Cmo14g01708 . . . . . . . . . . . . . Cla05g00594 Cam05g0654 Cec05g0662 Cco05g0658 Clacu05g0647 Cmu05g0616 Cre05g0684 . Csa03g01390 Chy06g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009906 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01664 Cma_Chr14 FPKM 5.138404 5.718852 6.839179 7.133451 9.652117 9.102777 10.6978 4.222222 4.242325 4.516491