Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01668 ATGGCTCAAATTTTAGCTCCATCCGTTCAATGGCAGCTGAAAACTAAACAGACTTCTATGAGTGCAAGCTCCATTACCCCTAAGATGTGGAGTTCTTTGCTTCTGAAGCAGAGCAGTAAAGTAGCAGTGAAGAGCTCTGCAAAGTTCAGAGTCCTGGCTCTCAAATCTGATGGCAGCACTATCAACAGGATGGAAGATCTGCTTAATCTCGACGTTACTCCTTATACCGACAAGATTATTGCTGAGTATATCTGGATTGGAGGATCTGGCATTGATTTGCGTAGTAAGTCAAGGACCATATCGAAGCCTGTTGAACATCCATCTGAGTTACCAAAGTGGAACTATGATGGATCTAGTACTGGACAAGCACCCGGAGAAGACAGTGAAGTCATTCTATATCCTCAAGCAATTTTCAAGGATCCCTTTCGTGGTGGCAACAACATTTTGGTTATTTGTGATGCATACACACCAGCTGGTGAGCCCATCCCTACAAACAAACGCCACAGAGCTGCTGAGATTTTCAGCAACAAGAAGGTTGTGGATGAAATTCCCTGGTATGGTATAGAGCAAGAGTACACCTTACTTCAAACAAATGTGAAGTGGCCTTTAGGTTGGCCAGTTGGAGCTTATCCTGGTCCTCAGGGCCCTTATTATTGTGGTGTCGGAGCTGATAAGTCGTTTGGCCGAGACATATCAGATGCCCACTACAAGGCTTGTTTATATGCCGGAATCAACATTAGTGGCACCAATGGAGAAGTCATGCCTGGCCAGTGGGAGTATCAAGTTGGTCCTAGCGTCGGGATCGAAGCTGGAGATCACATTTGGTGTTCTAGATACATTCTTGAGAGGATCACTGAGCAAGCCGGGGTAGTTCTCACACTTGATCCAAAACCAATTGAGGGTGACTGGAATGGAGCTGGATGCCACACCAATTACAGTACAAAGAGTATGAGGGAGGAAGGAGGCTTCGACGTCATAAAGAAGGCAATTCTGAATCTGTCTCTTCGCCACAATGAGCATATCAGTGCCTATGGAGAAGGGAATGAGAGAAGGTTGACAGGAAAGCACGAAACAGCAAGTATCAACACCTTTTCCTGGGGAGTGGCTAACCGTGGCTGTTCGATCCGTGTGGGACGTGACACTGAGAAGCAAGGCAAAGGTTATTTGGAAGACCGACGTCCTGCTTCAAACATGGACCCGTACGTCGTGACCTCACTGCTGGCAGAAACAACACTACTATGGGAGCCAACACTTGAAGCCGAGGCACTGGCTGCTCAGAAACTGTCATTGAAGGTCTAG 1299 46.81 MAQILAPSVQWQLKTKQTSMSASSITPKMWSSLLLKQSSKVAVKSSAKFRVLALKSDGSTINRMEDLLNLDVTPYTDKIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPAGEPIPTNKRHRAAEIFSNKKVVDEIPWYGIEQEYTLLQTNVKWPLGWPVGAYPGPQGPYYCGVGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFDVIKKAILNLSLRHNEHISAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKQGKGYLEDRRPASNMDPYVVTSLLAETTLLWEPTLEAEALAAQKLSLKV 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12467455 12471698 - CmaCh14G016680.1 Cma14g01668 308651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01668 432 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 297 313 IPR027303 -
Cma14g01668 432 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 163 432 IPR008146 GO:0004356|GO:0006807
Cma14g01668 432 ProSitePatterns Glutamine synthetase signature 1. 115 132 IPR027302 -
Cma14g01668 432 SUPERFAMILY Glutamine synthetase, N-terminal domain 78 162 IPR036651 GO:0004356|GO:0006542|GO:0006807
Cma14g01668 432 Pfam Glutamine synthetase, beta-Grasp domain 82 157 IPR008147 GO:0004356|GO:0006542|GO:0006807
Cma14g01668 432 SMART Gln_synt_C_2 163 411 IPR008146 GO:0004356|GO:0006807
Cma14g01668 432 SUPERFAMILY Glutamine synthetase/guanido kinase 164 413 IPR014746 GO:0003824
Cma14g01668 432 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 79 159 IPR008147 GO:0004356|GO:0006542|GO:0006807
Cma14g01668 432 Pfam Glutamine synthetase, catalytic domain 228 405 IPR008146 GO:0004356|GO:0006807
Cma14g01668 432 Gene3D - 61 163 IPR036651 GO:0004356|GO:0006542|GO:0006807
Cma14g01668 432 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 164 416 - -
Cma14g01668 432 PANTHER GLUTAMINE SYNTHETASE 61 415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01668 K01915 glnA, GLUL; glutamine synthetase [EC:6.3.1.2] - csv:101212441 834.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00830 Cma-Chr14:4242171 Cma14g01668 Cma-Chr14:12467455 0 dispersed
Cma14g01668 Cma-Chr14:12467455 Cma15g00734 Cma-Chr15:3561465 0 dispersed
Cma14g01668 Cma-Chr14:12467455 Cma06g01443 Cma-Chr6:9255273 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g412 . . Bda03g01264 . . . Bma04g01174 . . . . Cma14g01668 Car06g01245 Car14g01502 Sed02g1281 Cpe08g00232 Cpe03g01408 Bhi01g00873 Tan10g0907 Cmetu06g1518 . . . . . . . . . . . . . Cone7ag0205 Cone4ag0196 Lsi05g01467 . . Cme06g00659 . . . Bda13g00143 . . . . . Cmo06g01445 Cmo14g01714 . . . . . . . . . . . . . . . . . . . . . Csa03g01384 Chy06g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000333 5 5 3 4 4 4 2 4 4 4 4 4 7 3 4 8 4 8 7 4 4 4 2 4 4 3 4 9 5 5 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01668 Cma_Chr14 FPKM 10.715554 11.710236 25.674967 25.541962 90.723885 100.154144 90.337959 0.547124 0.538365 0.691721