Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01676 ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAACTATATTCAAAACCCACCTCCGCCGCCGCCGCCTCCTCCTCCGCCGCCCTACCTTTCTTCTTCCTCTTTCTATTTTCCACCTGAACCCCAATCTCTTTCTCCTACTCCACCACCACCACCACCACCGCCGCCGCCACCGCTGCAAACCCATCATTTCACCAATTCCCACCCTCCTCCGCCGCACATCCATCCTTACGGTCCAACTCCTCATCCTCCTGCCCCTACGCCTCAACCCTATTACTTTTCCGGTGGGTACAATTCGTGTAATTATGGGAACTCTACGATGGGGCGTTTCAATTTTCACCCTCATTATGCCAATCAGAGTAATGGGTGGCCCCAAATTCGGCCGGGCATGGGTCCGCCGATGCTTCCGCCACCGCCTTTGCCTTTAGTGGAGCATCGTCAAGCGAAGAAGGTTAGAAATGATGTGAATGTGCATAAGGATACTTTAAGGATTGAGGTGGACGAGCAGAACCCTGATCATCATTTGGTTTCTTTCGTTTTTGATGCTTTGTACGATGGAAGCATAACCATTCTATTCTTCGCCAAGGAAGAGCTCAACTGTAGGTTTGTTCCAGTATATCCCGATGCCTTCAAGCCAGTAAAAGTCCCATTTCAGAAGGGTCCTGCTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTGGGATTTTTCGACTTCGACGACCTCTCGAAACCTTCACCTGCTGAAGACATTTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCCTCTCATTCTGACGACGAACGAATTGGTGAGCCTCGACGACATGACTCACACATGCAAATCACTCAAGCTGTTTTGGAGAAGAAAAATGGTAGTCCTTTACAAGTAAGAGTGATTAGGCAACTACTATGGATTGATGGAGTGAGATATGAATTGCGTGAGATATTCGGAATAGGGAGTTCATCGGCTGAAGGTTTCGACGATAATGACTCCGGGAAGGAGTGTGTGATATGCATGACTGAACCGAAGGATACCGCTGTATTACCATGCCGACACTTGTGCATGTGCACTGATTGTGCCAAGGAACTGAAGCGTCAATCCAACAAATGTCCTATTTGTCGTCAACCGATCGAAGAACTTATCGAAATCAAGATAAACAATAGCGACCCATGA 1182 47.63 MGISWSNRRRNNYIQNPPPPPPPPPPPPYLSSSSFYFPPEPQSLSPTPPPPPPPPPPPLQTHHFTNSHPPPPHIHPYGPTPHPPAPTPQPYYFSGGYNSCNYGNSTMGRFNFHPHYANQSNGWPQIRPGMGPPMLPPPPLPLVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDHHLVSFVFDALYDGSITILFFAKEELNCRFVPVYPDAFKPVKVPFQKGPAQKFFQPVGTGFDLGFFDFDDLSKPSPAEDIFPLVISAETCSPSHSDDERIGEPRRHDSHMQITQAVLEKKNGSPLQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDSGKECVICMTEPKDTAVLPCRHLCMCTDCAKELKRQSNKCPICRQPIEELIEIKINNSDP 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12503100 12507030 + CmaCh14G016760.1 Cma14g01676 308659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01676 393 Pfam Zinc finger, C3HC4 type (RING finger) 336 382 - -
Cma14g01676 393 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 337 377 IPR045195 -
Cma14g01676 393 MobiDBLite consensus disorder prediction 1 90 - -
Cma14g01676 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Cma14g01676 393 PANTHER MAHOGUNIN 1 392 IPR045194 GO:0061630
Cma14g01676 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 392 - -
Cma14g01676 393 ProSiteProfiles Zinc finger RING-type profile. 338 377 IPR001841 -
Cma14g01676 393 SMART ring_2 338 376 IPR001841 -
Cma14g01676 393 MobiDBLite consensus disorder prediction 14 34 - -
Cma14g01676 393 MobiDBLite consensus disorder prediction 41 90 - -
Cma14g01676 393 SUPERFAMILY RING/U-box 337 383 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01434 Cma14g01676 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00797 Cma-Chr8:4814783 Cma14g01676 Cma-Chr14:12503100 2.76E-07 dispersed
Cma14g00207 Cma-Chr14:889938 Cma14g01676 Cma-Chr14:12503100 2.50E-81 dispersed
Cma14g01661 Cma-Chr14:12428989 Cma14g01676 Cma-Chr14:12503100 9.07E-06 dispersed
Cma14g01676 Cma-Chr14:12503100 Cma17g00162 Cma-Chr17:827734 5.12E-09 dispersed
Cma14g01676 Cma-Chr14:12503100 Cma06g01434 Cma-Chr6:9208912 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01676 - - cmax:111479192 676.011