Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01690 ATGGACGCTGTAACCACAAATTCGGAACGTAGGCCATTTTCTATCAAATTGTGGCCTCCTAGTGAAAATACTCGGAAAATGCTTGTGGAGCGGATGACAAATAACCTTACCAGCCAATCCTTTTTCACCCAAAAATATGGTACTCTTAGTCTGGAAGAGGCCGCAGATGAGTCAAAGCGAATTGAAGATATTGCTTTTGCTACAGCTAATCAGAATTATGAAAAGCAGCCAGATGGTGATGGGGGTGCTGCTGTGCAACTTTATGCCAAGGAATGCAGCAGGCTTCTTCTCGAGGTTCTTAAGAGAGGTCCTAAAGTCGAGGCAGGCAAGGAGGCTGAATCCGATACCACTAGTGCTCCTCGTGAAGTCTTTTTCGACATCTCAAAAGGTCGACGAGCCTTTATCGAGGCAGAGGAAGCTGAAGAACTTCTAAAGCCTTTGAAAGAGCCAGGAAATTATTATACCAAGATATGTTTCAGCAACCGAAGCTTTGGTTTAGAAGCAGCTCGTGTTACTGAGTCCATTTTGGTGTCCCTTAAAAATCAGTTAAAAGAAGTGGATCTCTCTGATTTTATTGCTGGAAGACCAGAGGCAGAAGCTCTAGAGGTCATGAAATTGTTCTCAGATGCTTTAGAAGGCAGCATCTTGAGGTCCCTTAACCTCTCAAACAATGCCTTGGGTGAAAAGGGTGTTCGAGCTTTTGGCTCTCTCCTGAAATCACAGACTTGTTTAGAGGAGCTATATTTGATGAATGATGGCATTTCCAAGGAAGCTGCTCAGGCGGTATCCGAGTTGATTCCTTCAACAGATAAGCTAAGGATCCTTCATTTTCATAATAACATGACAGGCGATGAAGGGGCTCTTGCCATTGCCGAGGTTGTAAAGCGTTCTCCTCTATTGGAAGATTTTCGTTGCTCCTCTACGAGGATAGACTCTGAGGGGGGAGTTGCCTTATCTTTAGCACTCGGGACTTGTACCCACTTGAGGAAACTTGACCTCCGAGACAACATGTTTGGAGTGGAAGGTGGAGTTGCTCTGAGTAAAGCCCTTTCATCCCATACAGATCTCAAGGAGTTGTATTTGAGCTACCTGAACTTGGAAGATGAAGGTGCAATTACCATAGCCAATGTACTGAAGGACACTGCTCCTGCACTTGAAGTCTTGGAGATGGCTGGAAATGACATAACAGCTGAAGCTGCTTCTGCATTAGCTGCTTGCATAGCTCAAAAGCCCCATCTGACCAGCTTGAATTTGGGTGAAAATGAACTGAAGGATGAAGGAACTATCCAGATTAGTAAGGCACTAGACGGTCACATCAAAATAAAGGAAATTGACATGAATACTAACTTGATTCGGAGGGCGGGGGCTCGGGTTTTAGCTCAGACTGTAGTTCAGAAGCCTGGTTTTGTGCTGCTGAACATCAATGGAAATTTCATTTCTGATGAAGGCATTGATGAGTTGAAAGATATTTTTAAAAAGTTTCCAGATATGCTTGGGGCCTTGGATGAAAACGATCCCGAGGGGGGAGATGGCGACGACCAGGAATCGGTAGGGAATGATGACGACGAGGATGAATTGGGATCAAAATTAAAGAACCTTGAAGTGAATGAAGAGAACTAG 1620 44.38 MDAVTTNSERRPFSIKLWPPSENTRKMLVERMTNNLTSQSFFTQKYGTLSLEEAADESKRIEDIAFATANQNYEKQPDGDGGAAVQLYAKECSRLLLEVLKRGPKVEAGKEAESDTTSAPREVFFDISKGRRAFIEAEEAEELLKPLKEPGNYYTKICFSNRSFGLEAARVTESILVSLKNQLKEVDLSDFIAGRPEAEALEVMKLFSDALEGSILRSLNLSNNALGEKGVRAFGSLLKSQTCLEELYLMNDGISKEAAQAVSELIPSTDKLRILHFHNNMTGDEGALAIAEVVKRSPLLEDFRCSSTRIDSEGGVALSLALGTCTHLRKLDLRDNMFGVEGGVALSKALSSHTDLKELYLSYLNLEDEGAITIANVLKDTAPALEVLEMAGNDITAEAASALAACIAQKPHLTSLNLGENELKDEGTIQISKALDGHIKIKEIDMNTNLIRRAGARVLAQTVVQKPGFVLLNINGNFISDEGIDELKDIFKKFPDMLGALDENDPEGGDGDDQESVGNDDDEDELGSKLKNLEVNEEN 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12561638 12563257 - CmaCh14G016900.1 Cma14g01690 308673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01690 539 Gene3D WPP domain 14 111 IPR038214 -
Cma14g01690 539 MobiDBLite consensus disorder prediction 503 522 - -
Cma14g01690 539 Pfam WPP domain 14 107 IPR025265 -
Cma14g01690 539 SMART LRR_RI_2 353 380 - -
Cma14g01690 539 SMART LRR_RI_2 410 437 - -
Cma14g01690 539 SMART LRR_RI_2 438 465 - -
Cma14g01690 539 SMART LRR_RI_2 269 296 - -
Cma14g01690 539 SMART LRR_RI_2 382 409 - -
Cma14g01690 539 SMART LRR_RI_2 466 493 - -
Cma14g01690 539 SMART LRR_RI_2 241 268 - -
Cma14g01690 539 SMART LRR_RI_2 213 240 - -
Cma14g01690 539 SMART LRR_RI_2 325 352 - -
Cma14g01690 539 SUPERFAMILY RNI-like 134 511 - -
Cma14g01690 539 Gene3D Ribonuclease Inhibitor 425 504 IPR032675 -
Cma14g01690 539 Pfam Leucine Rich repeat 216 234 IPR001611 GO:0005515
Cma14g01690 539 Pfam Leucine Rich repeat 410 427 IPR001611 GO:0005515
Cma14g01690 539 Pfam Leucine Rich repeat 324 347 IPR001611 GO:0005515
Cma14g01690 539 Pfam Leucine Rich repeat 385 404 IPR001611 GO:0005515
Cma14g01690 539 Pfam Leucine Rich repeat 353 375 IPR001611 GO:0005515
Cma14g01690 539 MobiDBLite consensus disorder prediction 498 539 - -
Cma14g01690 539 MobiDBLite consensus disorder prediction 523 539 - -
Cma14g01690 539 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 1 539 IPR045203 GO:0005096
Cma14g01690 539 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 1 539 - -
Cma14g01690 539 Gene3D Ribonuclease Inhibitor 128 407 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01690 K14319 RANGAP1; Ran GTPase-activating protein 1 - csv:101208192 904.434
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01424 Cma14g01690 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00160 Cma-Chr5:691156 Cma14g01690 Cma-Chr14:12561638 1.83E-13 dispersed
Cma09g00266 Cma-Chr9:1108482 Cma14g01690 Cma-Chr14:12561638 2.24E-12 dispersed
Cma14g01690 Cma-Chr14:12561638 Cma05g00900 Cma-Chr5:7089447 5.59E-20 dispersed
Cma08g00308 Cma-Chr8:1757282 Cma14g01690 Cma-Chr14:12561638 0 transposed
Cma14g01690 Cma-Chr14:12561638 Cma06g01424 Cma-Chr6:9154854 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g461 . . . . . Bpe14g01174 . . . . Cma06g01424 Cma14g01690 Car06g01227 Car14g01523 Sed02g1253 . Cpe03g01424 Bhi01g00837 Tan10g0865 Cmetu09g1642 . . . Lcy11g1522 . . . . . . . . . . . Lsi05g01438 . . Cme06g00627 . . . Bda13g00139 . . . . . Cmo06g01427 Cmo14g01734 . . . . . . . . . . . . . Cla05g00563 Cam05g0619 Cec05g0629 Cco05g0624 Clacu05g0615 Cmu05g0583 Cre05g0651 . Csa03g01352 Chy06g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001623 3 2 2 2 3 2 3 2 2 2 2 2 3 2 1 3 2 4 2 2 2 2 1 2 2 2 2 5 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01690 Cma_Chr14 FPKM 24.411112 27.8018 25.969685 31.375679 58.328548 48.540119 63.632061 13.332403 13.453318 13.804831