Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01701 ATGAACCTTCGCTTTCCAGTTCCTTCTTCACCGATTCCTCTCGTAGCTTCTAACACTCTTCTCACTGCTCTTTTCCTTGCTTCTATCTGCTGCCGGAATCTCCGTCTTCTTGTTCATTCTGCAACCTGCTTGCTCGGTTCAACCATTTTGATCGTTGCTGCTTCTGGTAATTCTATTTTCTTTCCTCAATTTGTTCTCACGAAACTGATTATGGCGGAACCAATATACACTGTTGCTTCTGATAGTGAAACCACTGGGGAGGATAGATCAGCACCAATCTTTCCGGAAATTGCTGTTGGAATTGATATTGGTACTTCACAGTGTAGTATTGCATTCTGGAATGGATCTCAGGTTGAGCTTCTTAAGAACACTAGAAATCAGAAGATTATGAGATCATATGTCACCTTCAAGGATGATACTCCTTCTGGTGGAGTTATTAATGAGCTAAGCCACGAGTATGACATGCTCTCTGGTGCTGCAATTTTCAATATGAAACGCTTGATTGGAAGAGTTGACACTGACCCAGTTGTTCATGCAAGCAAGAGCCTTCCTTTTCTAGTGCAAACTTTGGACATTGGTGTTCGTCCATTTGTTGCAGCTTTGGTGAATAATGTATGGAGATCTACCACTCCCGAAGAAGTTCTGGCAATCTTTCTTGTTGAACTGAAAATGATGGCTGAACATCAACTGAAGCGGCCAATTAGAAATGTTGTTTTAACAATTCCGGTCTCATTCAGCCGATTTCAGCTTACTCGGGTGGAACGTGCTTGTGCAATGGCTGGCCTTCAAGTCAGATTGATGCCTGAACCAACAGCAGTAGCTTTATTGTATGCCCAACAACAGCAGCAGCAGGCTGTACATGAGAACATGGGCAGTGGAAGTGAAAAAATCGCCCTTATTTTCAACATGGGAGCTGGATATTGTGATGTTGCTGTATCAGCCACAGGGGGAGGAGTGTCACAGATCAAAGCCCTGGCTGGAAGTCCTATTGGAGGTGAAGATCTACTTCAAAATACCATGAAGTATCTTTTGCCAAATGTGGAATCTATATTTTCACACCGTGGAATCGATGAGATCAGAAGGATGGGGTTACTCCGAGTTGCGACTCAAGATGCTATCCACAAGCTTTCATTCCAGTCAAGTGTTCAAATCGATGTGAACTTGGGAAATGGGTCTAAGTTGTGCAAGGTTTTAAGCCGAGAGGAGTTCGAGATGGTGAACAGCGAGGTGTTTGAGAAATGCAAGAACCTTGTAAATCAATGCTTACATGATGCAAGAGTAGGGATTGATGATTTGAGCGACGTAGTAGTAGTCGGTGGATGTTCGAACATACCAAAGATCAGAAGTCTTCTGATGCAAAAAAGCAAAAAGAAGGCACTTTATGAAGGAATGAATCCTTTAGAAGCTGCTGTCTCTGGTGCAGCTTTAGAAGGTGCAGTAGCATCGGGCATTGCCGATCCGTTTGGAAGTTTAGATCTCCTTAGCATCCAAGCAACGCCTCTCGCCATTGGAATTCGAGCTGATGGAAACAGCTTCATTCCAATTATTCCCAAGAACACTACAATGCCAGCACGCAAGGAATTGGTTTTCACAACTGTAAAAGACAATCAAAGCGAGGCCCTGATTGTTGTATATGAAGGCGAAGAGACAAGAGCAGAAGAAAATCATCTACTTGGCTATTTCAAGATCATTGGAATTCCACCAGCACCCAAAGGACTCCCTGAGATTACTATCTGTATGGACATCGACTCCTCAAATATGCTTAGAGTTCTAGCTGGGGCAAGACTCCCAGGCGCTCATCACCCTGCAACCCCTTTCATGGAAGTCAAGATGCCGACCGTGGACGATGGACATGGCTGGTGTGCAGAAGCTCTGCATGGAAAATATGGTGCTGCCATGGACTTGGTTTCATTGCAGAAGAAAAGCTAG 1929 44.12 MNLRFPVPSSPIPLVASNTLLTALFLASICCRNLRLLVHSATCLLGSTILIVAASGNSIFFPQFVLTKLIMAEPIYTVASDSETTGEDRSAPIFPEIAVGIDIGTSQCSIAFWNGSQVELLKNTRNQKIMRSYVTFKDDTPSGGVINELSHEYDMLSGAAIFNMKRLIGRVDTDPVVHASKSLPFLVQTLDIGVRPFVAALVNNVWRSTTPEEVLAIFLVELKMMAEHQLKRPIRNVVLTIPVSFSRFQLTRVERACAMAGLQVRLMPEPTAVALLYAQQQQQQAVHENMGSGSEKIALIFNMGAGYCDVAVSATGGGVSQIKALAGSPIGGEDLLQNTMKYLLPNVESIFSHRGIDEIRRMGLLRVATQDAIHKLSFQSSVQIDVNLGNGSKLCKVLSREEFEMVNSEVFEKCKNLVNQCLHDARVGIDDLSDVVVVGGCSNIPKIRSLLMQKSKKKALYEGMNPLEAAVSGAALEGAVASGIADPFGSLDLLSIQATPLAIGIRADGNSFIPIIPKNTTMPARKELVFTTVKDNQSEALIVVYEGEETRAEENHLLGYFKIIGIPPAPKGLPEITICMDIDSSNMLRVLAGARLPGAHHPATPFMEVKMPTVDDGHGWCAEALHGKYGAAMDLVSLQKKS 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12612912 12615729 - CmaCh14G017010.1 Cma14g01701 308684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01701 642 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 74 641 - -
Cma14g01701 642 PRINTS 70kDa heat shock protein signature 97 110 - -
Cma14g01701 642 PRINTS 70kDa heat shock protein signature 492 511 - -
Cma14g01701 642 PRINTS 70kDa heat shock protein signature 573 589 - -
Cma14g01701 642 PRINTS 70kDa heat shock protein signature 237 257 - -
Cma14g01701 642 PRINTS 70kDa heat shock protein signature 432 448 - -
Cma14g01701 642 PRINTS 70kDa heat shock protein signature 464 484 - -
Cma14g01701 642 PRINTS 70kDa heat shock protein signature 125 137 - -
Cma14g01701 642 Gene3D - 99 479 - -
Cma14g01701 642 CDD HSP70_NBD 99 479 - -
Cma14g01701 642 SUPERFAMILY Actin-like ATPase domain 97 279 IPR043129 -
Cma14g01701 642 Gene3D - 162 217 - -
Cma14g01701 642 Gene3D - 282 461 - -
Cma14g01701 642 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 490 601 IPR029047 -
Cma14g01701 642 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 494 593 IPR029047 -
Cma14g01701 642 Pfam Hsp70 protein 98 594 IPR013126 GO:0005524|GO:0140662
Cma14g01701 642 SUPERFAMILY Actin-like ATPase domain 295 480 IPR043129 -
Cma14g01701 642 PANTHER HEAT SHOCK PROTEIN 70KDA 74 641 IPR013126 GO:0005524|GO:0140662
Cma14g01701 642 Gene3D Actin; Chain A, domain 4 332 413 - -
Cma14g01701 642 ProSitePatterns Heat shock hsp70 proteins family signature 3. 435 449 IPR018181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01701 K09489 HSPA4; heat shock 70kDa protein 4 - csv:101206971 1033.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01701 Cma-Chr14:12612912 Cma15g00399 Cma-Chr15:1783716 8.19E-89 dispersed
Cma14g01701 Cma-Chr14:12612912 Cma04g02638 Cma-Chr4:17988931 1.54E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g487 . . . . . . . . . . . Cma14g01701 . Car14g01537 Sed12g0915 . Cpe03g01430 Bhi01g00820 Tan10g0851 Cmetu06g1845 . Hepe05g1544 . Lcy11g1539 . . . . . . . . . . . Lsi05g01597 Csa02g01145 . Cme06g00615 . Blo07g00214 Bda11g00572 . . Bpe13g00611 . Bma06g01551 . . Cmo14g01744 . . . . . . . . . . . . . Cla05g00551 Cam05g0599 Cec05g0610 Cco05g0607 Clacu05g0597 Cmu05g0567 Cre05g0635 . Csa03g01338 Chy06g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010241 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01701 Cma_Chr14 FPKM 6.34098 7.772635 16.980673 17.336452 10.377778 10.194896 9.366286 122.130898 117.4786 125.49688