Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01706 ATGCTCAAAGTGGACTTCCAGCTTTCCTACATTATCAAAATGGCGAGCTCAAGTGAGAGTGAACGCAAGGAACCAGTGAACGAGCAAATGGTTGCAAACATGTATGGTGCTTTAAGGTCTGAGCTCAATCAGATATACTCAAAAATCACAGAACTCGAGATGGAAGTCAGTGAACACTCTCTGGTCATTTCTGCAATTGAGCCACTTGATCCATCAAGACGATGCTACAGAATGATCGGGGGAGTGCTGGTGGAAAGAACTATCAAAGAGGTCCTGCCCGCTGTTCAACGCAACAAAGAGGGACTTGAGGAGGTGATTTCCAGACTCAATGAGGCATTGGAGAAGAAAAAGAAGGAAATTTCTGACTTGGAGGCCAAATACAAGATCAGGATTAGAAAGCCTGATGGTGAGGCTAAGGAGGAAGACAGTGGGCGGAAAGAGGGTGCAGCCCAAGGAGTCTTAGTAGGCCCTGCAAATGAAAGTTAA 486 45.88 MLKVDFQLSYIIKMASSSESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEVSEHSLVISAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEISDLEAKYKIRIRKPDGEAKEEDSGRKEGAAQGVLVGPANES 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12626758 12628494 + CmaCh14G017060.1 Cma14g01706 308689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01706 161 MobiDBLite consensus disorder prediction 131 161 - -
Cma14g01706 161 SUPERFAMILY Prefoldin 32 130 - -
Cma14g01706 161 Pfam Prefoldin subunit 29 131 IPR002777 GO:0006457|GO:0016272|GO:0051082
Cma14g01706 161 Coils Coil 35 55 - -
Cma14g01706 161 Coils Coil 92 133 - -
Cma14g01706 161 PANTHER PREFOLDIN SUBUNIT 2 14 156 IPR027235 GO:0006457|GO:0016272
Cma14g01706 161 Gene3D - 25 135 IPR009053 -
Cma14g01706 161 MobiDBLite consensus disorder prediction 131 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01706 K09549 PFDN2; prefoldin subunit 2 - csv:101203077 281.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01706 Cma-Chr14:12626758 Cma06g01412 Cma-Chr6:9087675 3.72E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g505 . . . . . Bpe14g01188 . . . . . Cma14g01706 Car06g01217 Car14g01541 . Cpe08g00258 Cpe03g01434 Bhi01g00814 . . . Hepe05g1550 . . . . . . . . . Cone14ag0854 . . . Lsi05g01603 . . . . . . . . . Bma02g00847 . . . Cmo14g01749 . . . . . . . . . . . . . Cla05g00544 Cam05g0595 Cec05g0605 Cco05g0602 Clacu05g0592 Cmu05g0562 Cre05g0631 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003116 1 3 2 2 2 1 3 1 1 1 1 1 2 1 2 2 1 3 2 1 2 2 2 1 1 1 1 4 1 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01706 Cma_Chr14 FPKM 42.051441 44.070683 32.333889 30.067366 36.989548 38.972958 36.090195 47.116852 45.326542 42.315285