Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01717 ATGTTTTTTCTTGTTGTAGATTCCATGGTAGTTGAGAGGGCTCGTGGTGAATCCCAAAGTATGTCAGGATCTCTTCAGTCCTTATGTTGGGGGTCTTCAGCTTTTGGTGGAATAGTGAGTTCCTACTTTAGTGGTTCACTGGTGGATGCATATGGTGTAAGGTTTGTTTTTGGAGTCACAGCTTTGTTGCCATTGATAACATCTGTGGTGGCAGTTCTTGTAAAAGAGCAGCCTGTGAGAGGAATAAATCGTCCTTCAGCTAGCTATGATTTTCTTGGGAGCTCAAGACAGCACGTTGTTGAATTGTGGGATGCTATTAGTCAACGAAATGTGTTTCTTCCAACATTATTTATTTTCTTGTGGCAGGCAACACCACAATCAGATTCTGCCATGTTCTTCTTTACCACAAATAAACTTGGATTCACTCCCGAATTTCTAGGGCGTGTCAAGCTTGTTACATCAATAGCATCGCTGCTTGGCGTTGGGCTTTATAATGGATTTCTTAAGAAAGTTCCTCTGAGGAAAATTTTTCTAGTAACCACCATTTTTGGCAGTGCACTTGGAATGAGCCAGGTTCTCCTTGTAACGGGGTTAAATCGTGAGTGGGGTATAAGCGATGAGTGGTTTGCGATTGGGGATTCGTTGATTATAACGGTTCTTGGTCAGGCGTCTTTCATGCCTGTTCTTGTTCTAGCAGCAAAATTATGTCCAGAAGGAATGGAAGCCACACTTTTTGCAACCCTCATGTCCATATCAAACGGAGGGAGTCTGCTAGGTGGCCTAATTGGTGCCGGTTTGACGCAACTGTTCGGCGTCACCAAAGACTCGTTCGATAACCTGTCCACCTTGATAATCCTGTGCAACCTTAGTTCACTGTTGCCATTGCCACTGCTCGGCCTCCTTCCCAAGGAATCCCCAGACTCAAACTCAGAGACCACTGACATAGAGTTGAAGTCTAACTAA 963 44.24 MFFLVVDSMVVERARGESQSMSGSLQSLCWGSSAFGGIVSSYFSGSLVDAYGVRFVFGVTALLPLITSVVAVLVKEQPVRGINRPSASYDFLGSSRQHVVELWDAISQRNVFLPTLFIFLWQATPQSDSAMFFFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKKVPLRKIFLVTTIFGSALGMSQVLLVTGLNREWGISDEWFAIGDSLIITVLGQASFMPVLVLAAKLCPEGMEATLFATLMSISNGGSLLGGLIGAGLTQLFGVTKDSFDNLSTLIILCNLSSLLPLPLLGLLPKESPDSNSETTDIELKSN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12661193 12663562 - CmaCh14G017170.1 Cma14g01717 308700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01717 320 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 4 314 IPR039309 -
Cma14g01717 320 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1 CHLOROPLASTIC 4 314 - -
Cma14g01717 320 SUPERFAMILY MFS general substrate transporter 3 303 IPR036259 -
Cma14g01717 320 TIGRFAM fbt: folate/biopterin transporter 4 312 IPR004324 GO:0016021
Cma14g01717 320 CDD MFS_FBT 5 288 - -
Cma14g01717 320 Gene3D MFS general substrate transporter like domains 1 294 IPR036259 -
Cma14g01717 320 Pfam BT1 family 5 71 IPR039309 -
Cma14g01717 320 Pfam BT1 family 90 305 IPR039309 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01717 - - - csv:101219933 529.635
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01399 Cma14g01717 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01717 Cma-Chr14:12661193 Cma17g00227 Cma-Chr17:1156704 3.21E-126 dispersed
Cma14g01717 Cma-Chr14:12661193 Cma06g01399 Cma-Chr6:9046338 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g521 Blo01g00123 . . Bda08g00239 . . . Bma05g01105 . Cmo17g00216 Cma06g01399 Cma14g01717 Car06g01207 Car14g01551 Sed02g1305 Cpe08g00268 . Bhi01g00795 Tan10g0827 Cmetu06g2498 Lac12g2270 Hepe05g1561 . Lcy11g1554 Cla06g00593 Cam06g0632 Cec06g0635 Cco06g0638 Clacu06g0618 Cmu06g0611 Cre06g1379 . Cone15ag0834 . . Lsi05g01614 . . Cme06g00600 . . . . Bpe05g00897 . . . . Cmo06g01403 . . . . Car17g00202 Cpe12g00192 . Bhi12g01699 Tan06g2513 . . . . . Cla05g00533 Cam05g0584 Cec05g0594 Cco05g0592 Clacu05g0581 Cmu05g0551 Cre05g0620 Lsi09g01311 Csa03g01316 Chy06g00568 Cme01g01574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002132 1 3 1 1 1 2 2 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 2 2 2 2 2 5 6 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01717 Cma_Chr14 FPKM 9.942375 11.868086 11.266058 11.747469 12.647201 10.55116 12.126309 20.404015 18.818863 19.757891