Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01719 ATGAACCCATCAACAATCTCCGTCCGCCCGTTCAATCTCTCCGACGCCGACGACTTTCTCAGGTGGGCCGGCGATGACAGAGTAACCCGCTATCTCCGATGGAACACAATAACCTCCAAAGAAGAAGCATTAGCTTACCTAGAGAAGGTCGCAATCCCCCATCCATGGCGGCGGTCCATTTGCCTGAACGGCCGTTCCGTCGGGTACGTTTCGGTCAAGCCGGAATCAGAGGAGAAATGCAGAGCGAATATCAGTTATGCGGTGGCTGCAGAGCACTGGGGAAGAGGGATAGCCACGGAAGCACTGAGGGTGGCAATTCCGGCGGCGCTGATAGATTTCCCGGAGGTAGTTAGGATTCAGGCGCTGGTGGAGGTGGAGAATGAGGGATCACAGAGGGTTCTGGAAAAATTGGGGTTTTGCAGAGAGGGGCTGTTGAGGAAATACGGATTTTTCTCAATCTCGCGCTTCGAAAACCCAATTCTGTCCTTCCCTACTTCCTATAAGATACGCCGGAAGCCGGCTCCTCCCGGCTTCGGAGCCTTCAAGCGGAGTCGACAGCCGCCATCGTCGCTGCTGCCTTGTCGGAACAGTCCTGAAGACGACATGTCTGTCGCCGTTCCCATGTCGCAAATGGACGAGGATGACGAGTCATTGCCCAATTCTCGGAGTGGTAATGACAGAGAAGGATTGCTTCCGTATAATGGTAAAAGTACTGCTCATAAGAAGTATTTCTCGAGCACCATTAAAATTTTTGGGGTGGACCTATCTCCAGATAATGTGGCTGTCGCCATGGTTTATTTTGTTCAAGGGGTTTTAGGCCTAGCCAGGCTTGCGGTCAGTTTTTACTTAAAGGATGATCTGCACCTAGATCCTGCAGAGACAGCTGTAGTATCTGGCTTCTCTGCATTTCCGTGGCTTGTCAAACCTTTATATGGGTTTATCAGTGATTCTGTTCCTCTTTTTGGTTATCGGAGAAGATCGTACTTGATTTTATCAGGACTGCTTGGTGCACTTTCGTGGACTTTAATGGCCACACTTGTCGATAGCAAGTATGGTGCTGCTTTCTGTATACTCCTTGGATCGCTTTCTGTAGCATTCTCAGATGTTAACTCTATGACATCTTCCATTTATGTTTGGACCACTGGACTTTAG 1152 49.65 MNPSTISVRPFNLSDADDFLRWAGDDRVTRYLRWNTITSKEEALAYLEKVAIPHPWRRSICLNGRSVGYVSVKPESEEKCRANISYAVAAEHWGRGIATEALRVAIPAALIDFPEVVRIQALVEVENEGSQRVLEKLGFCREGLLRKYGFFSISRFENPILSFPTSYKIRRKPAPPGFGAFKRSRQPPSSLLPCRNSPEDDMSVAVPMSQMDEDDESLPNSRSGNDREGLLPYNGKSTAHKKYFSSTIKIFGVDLSPDNVAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAETAVVSGFSAFPWLVKPLYGFISDSVPLFGYRRRSYLILSGLLGALSWTLMATLVDSKYGAAFCILLGSLSVAFSDVNSMTSSIYVWTTGL 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12665492 12669709 - CmaCh14G017190.1 Cma14g01719 308702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01719 383 SUPERFAMILY MFS general substrate transporter 262 367 IPR036259 -
Cma14g01719 383 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 6 170 IPR000182 GO:0016407
Cma14g01719 383 Pfam BT1 family 269 371 IPR039309 -
Cma14g01719 383 CDD NAT_SF 60 106 - -
Cma14g01719 383 Pfam Acetyltransferase (GNAT) domain 8 139 IPR000182 GO:0016407
Cma14g01719 383 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 197 370 IPR039309 -
Cma14g01719 383 Gene3D - 3 159 - -
Cma14g01719 383 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1 CHLOROPLASTIC 197 370 - -
Cma14g01719 383 MobiDBLite consensus disorder prediction 177 230 - -
Cma14g01719 383 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 5 150 IPR016181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01719 - - - mcha:111009427 358.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01399 Cma-Chr6:9046338 Cma14g01719 Cma-Chr14:12665492 5.56E-99 dispersed
Cma14g01719 Cma-Chr14:12665492 Cma17g00227 Cma-Chr17:1156704 2.49E-70 dispersed
Cma14g01719 Cma-Chr14:12665492 Cma14g01720 Cma-Chr14:12670084 1.17E-40 tandem
Cma14g01719 Cma-Chr14:12665492 Cma06g01398 Cma-Chr6:9046002 9.94E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g524 . . . . . Bpe14g01195 . . . . . Cma14g01719 . Car14g01552 . . . . . . . . . . . . . . . . . . . . . Lsi05g01615 . . Cme06g00598 . . . . . Bpe13g00601 . . . . . . . . . . . . . . . . . . Cla05g00531 Cam05g0582 Cec05g0592 Cco05g0590 Clacu05g0579 Cmu05g0549 Cre05g0618 . Csa03g01314 Chy06g00566 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003175 1 1 0 1 1 2 0 2 2 2 2 2 1 2 1 0 2 0 0 2 2 5 2 2 2 2 2 2 3 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36318 PF13302 Acetyltransf_3 1.50E-22 CL0257 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01719 Cma_Chr14 FPKM 4.938368 4.792741 5.125792 4.415198 3.41994 4.913445 3.732624 5.913205 5.43947 6.927943