Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01720 ATGGAAATTACTCTCCGGCCACTAGATCTCACTGACATCGACGATTTCATGGCTTGGGCATCGGACGAGAAAGCAGCTCGATCCTGTTCCTGGGAGCCCTACCAGGACAAATTGGACGCCATAAAGTATATCAACGACCAAGTCCTGTCGCACCCCTGGTACCGAGCCATCTGTGTCGACGGGCGGCCGGTTGGAGCGATTTCGGTGACGGCGAATGAGGCAGCGAGGGACCGGTGCAGGGGAGAGCTAGGGTACGTATTGGGATCCAAATTTTGGGGGAAAGGGATTGGGACGGCGGCGGTGAAATTGGTGGCGGAGAGGATTTTCGTGGAGCGGCCGGAACTGGAGAGGTTGGAGGCGTTGGTGGATGTGGAGAATTTGGCGTCTCAGAGAGTGGTGGAGAAGGCCGGATTTCAGAGAGAAGGCGTTCTGAGAAAATATGGAGTGATGAAAGGGCAAACTAGGGATTATGTAATGTTTAGTCTTCTTTCTACTGATCTCGAATAA 507 53.25 MEITLRPLDLTDIDDFMAWASDEKAARSCSWEPYQDKLDAIKYINDQVLSHPWYRAICVDGRPVGAISVTANEAARDRCRGELGYVLGSKFWGKGIGTAAVKLVAERIFVERPELERLEALVDVENLASQRVVEKAGFQREGVLRKYGVMKGQTRDYVMFSLLSTDLE 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12670084 12670590 + CmaCh14G017200.1 Cma14g01720 308703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01720 168 Gene3D - 1 168 - -
Cma14g01720 168 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 3 163 IPR016181 -
Cma14g01720 168 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 3 164 IPR000182 GO:0016407
Cma14g01720 168 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 2 166 - -
Cma14g01720 168 CDD NAT_SF 56 107 - -
Cma14g01720 168 Pfam Acetyltransferase (GNAT) domain 3 139 IPR000182 GO:0016407
Cma14g01720 168 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 2 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01720 - - - mcha:111009349 300.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01719 Cma-Chr14:12665492 Cma14g01720 Cma-Chr14:12670084 1.17E-40 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g525 . . . . . . . . . . . Cma14g01720 . . . . Cpe03g01444 . . . . . . . . . . . . . . . . . . Lsi05g01616 . . . . . . . . . . . . . Cmo14g01760 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006036 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 5 1 2 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36319 PF13302 Acetyltransf_3 6.50E-25 CL0257 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01720 Cma_Chr14 FPKM 13.177515 14.125352 2.509934 4.239761 0.536919 1.312835 0.344213 20.9056 20.880003 19.378325