Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01721 ATGGATCCTCTCTCAGCTCTCAGAGAATTCACCATTAGAGGCGAGCTCGACAAAATCGTCCGCGTCAACGACGAGTTCCGTTTCGCCTCCGACTATTCGTTCCCTTGCGCCGCCGAAACCGCTTACCGCTCCAAACAGGGCAATCTTTACACACTCGAAACCCTCGTCTATTACATCCAAAATCACCTTGTCAAGCACACAGAGTATCTTCAGAACGCTCGCACGCAGGGAGTTACTTCGGTTACTTTCCCGGACCGGAAGCCTTTGCTTGATTATCTTACTGGCAAGGTCTCCTCCTCCGACGCCATTGAGCTTCTTGTCCACCAAAATCCCAAGTTTCCCGATTTGCCCTCTGCGAATGAGTATCGCCCTGAAAACCCTGTGGTTGTTGGCGCAGCCATCGATGCGGTCGATGAGGTCGACGGTTTAAAGGATTCTACCAATGTGAATTATATGGCGATGATTACGGCTATTGAGAGACCGTTGAAGGACAGAGAATCGTTGTTGGAATGTAAGAATAGGAATTTCTACAACGTGCTTGTGGCGTCGACGAAGCGCGAGGAGGAGAGGCAGCGTCTTGAATCGCAGCAGAGGAAGGATGGTTTGGTTGCTAAGAGTAGGTTAATGGGATCCGATGACAGGGGTTTGGTGGGGTATGGTGATGATTTGGGTTATGATGCGAATCCGAAACCGAAAATGCATTTGAAGGGAGGAAAAATTGGTGAAGGTGTGCCAATAATTCTGGTTCCGAGTGCTTTTCAGACTCTAATCACAATATATAATGTGAAAGAGTTCTTGGAAGATGGTGTTTATATACCCACGGACGTCAAGGTTAAGCAGATGAAAGGGGTGAGGCCTGAATGTGTGACCGTGCAGAAGAAGTTCAGTAGGGATAGAGATAGAGTGGTGACGGCGTACGAGGTTAGGGACAAACCCTCGGCTCTGAAATCAGAGGATTGGGACCGTGTTGTAGCTGTTTTCGTATTGGGAAAGGAATGGCAGTTTAAAGATTGGCCCTATAAGAACCATGTTGAGATTTTCAATAGAATTATTGGATTTTATATGCGATTTGAAGACGACAGTTTGGAATCAGCTAAGAATGTGAAGCAGTGGAATGTTAGAATTATTTCGATTAGCAAGAACAAGCGGCACCAAGACAGAGCTGCAGCATTGGAGGTGTGGGATAGGCTAGAAGAATTTGTGAGGTCACGGTCGCATTCTTGA 1224 47.06 MDPLSALREFTIRGELDKIVRVNDEFRFASDYSFPCAAETAYRSKQGNLYTLETLVYYIQNHLVKHTEYLQNARTQGVTSVTFPDRKPLLDYLTGKVSSSDAIELLVHQNPKFPDLPSANEYRPENPVVVGAAIDAVDEVDGLKDSTNVNYMAMITAIERPLKDRESLLECKNRNFYNVLVASTKREEERQRLESQQRKDGLVAKSRLMGSDDRGLVGYGDDLGYDANPKPKMHLKGGKIGEGVPIILVPSAFQTLITIYNVKEFLEDGVYIPTDVKVKQMKGVRPECVTVQKKFSRDRDRVVTAYEVRDKPSALKSEDWDRVVAVFVLGKEWQFKDWPYKNHVEIFNRIIGFYMRFEDDSLESAKNVKQWNVRIISISKNKRHQDRAAALEVWDRLEEFVRSRSHS 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12671034 12672523 + CmaCh14G017210.1 Cma14g01721 308704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01721 407 PANTHER CDC73 DOMAIN PROTEIN 1 407 IPR007852 GO:0006368|GO:0016570|GO:0016593
Cma14g01721 407 Pfam Paf1 complex subunit CDC73 N-terminal 2 104 IPR032041 -
Cma14g01721 407 Gene3D - 237 407 IPR038103 -
Cma14g01721 407 Pfam RNA pol II accessory factor, Cdc73 family, C-terminal 244 400 IPR031336 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01721 K15175 CDC73; parafibromin - csv:101205070 758.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01396 Cma-Chr6:9040235 Cma14g01721 Cma-Chr14:12671034 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g526 . . . . . Bpe14g01196 . . . . . Cma14g01721 Car06g01205 Car14g01553 Sed02g1302 Cpe08g00269 Cpe03g01445 Bhi01g00792 Tan10g0823 Cmetu06g1677 . Hepe05g1565 . Lcy11g1561 . . . . . . . Cone14ag0859 Cone15ag0857 . . Lsi05g01617 . . Cme06g00597 Blo02g00533 . . Bda13g00112 . . . . . Cmo06g01401 Cmo14g01761 . . . . . . . . . . . . . Cla05g00529 Cam05g0581 Cec05g0591 Cco05g0589 Clacu05g0578 Cmu05g0548 Cre05g0617 . Csa03g01313 Chy06g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008561 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01721 Cma_Chr14 FPKM 5.437893 5.40791 3.608092 4.271416 8.967168 10.928812 11.562904 4.40818 5.703219 5.138975
Cma14g01721 Cma_Chr00 FPKM 3.95188 3.425631 1.521341 2.336843 2.103307 1.720316 1.774396 2.02569 2.688878 2.318785