Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01723 ATGGAACACACAAAGATGGTGATGACTCTAGTTGCGGTTATTGTTGCTGTGCACTGGGCAGGAGCAGCCGCACAGTCGGACTGTACAAATGTGCTGATCAGCTTGTCGCCATGCTTTAATTACATTACAGGGAACTCCTCTACCCCATCACAAGCATGCTGCACACAGCTTGCAAGTGTTGTCCGTTCACAACCACAATGCTTGTGCCAGGTCCTGAATGGTGGTGGCTCGTCGCTTGGGATCAATATCAACCAAACCCAGGCCCTGGCTCTTCCCCGAGTTTGCAATGTTCAGACTCCTTCCATCAGCAGCTGCAATGTTGCTACTCCCACCGGCTCTCCAGCAGGAGCACCAGAATCTTCAAACAACGTTCCTTCAGGACCTGGATCAAAGACTGTTCCATCAACAGACAACGACTCATCAGACGGAACCTCGAACACTTTGTCAAAACCTCTACTATTCTCCATCTTGTTGGCTTCTGCATATGCTTCAGCTTTCAAGTTGTACTGA 510 49.41 MEHTKMVMTLVAVIVAVHWAGAAAQSDCTNVLISLSPCFNYITGNSSTPSQACCTQLASVVRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPESSNNVPSGPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAFKLY 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12673060 12674286 - CmaCh14G017230.1 Cma14g01723 308706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01723 169 Pfam Probable lipid transfer 15 105 IPR016140 -
Cma14g01723 169 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 163 - -
Cma14g01723 169 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Cma14g01723 169 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Cma14g01723 169 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Cma14g01723 169 SMART aai_6 28 105 IPR016140 -
Cma14g01723 169 Gene3D - 25 110 IPR036312 -
Cma14g01723 169 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 107 IPR036312 -
Cma14g01723 169 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 163 IPR043325 -
Cma14g01723 169 MobiDBLite consensus disorder prediction 108 144 - -
Cma14g01723 169 CDD AAI_LTSS 35 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01723 - - - csv:101204822 273.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01841 Cma-Chr4:9278410 Cma14g01723 Cma-Chr14:12673060 1.30E-15 dispersed
Cma10g00970 Cma-Chr10:5008547 Cma14g01723 Cma-Chr14:12673060 2.28E-14 dispersed
Cma11g01640 Cma-Chr11:10790703 Cma14g01723 Cma-Chr14:12673060 9.29E-19 dispersed
Cma14g01723 Cma-Chr14:12673060 Cma19g00265 Cma-Chr19:1897933 7.87E-15 dispersed
Cma16g01050 Cma-Chr16:8048949 Cma14g01723 Cma-Chr14:12673060 5.67E-08 dispersed
Cma14g01723 Cma-Chr14:12673060 Cma14g01724 Cma-Chr14:12675100 2.87E-06 tandem
Cma14g01723 Cma-Chr14:12673060 Cma17g00224 Cma-Chr17:1141875 3.78E-09 wgd
Cma14g01723 Cma-Chr14:12673060 Cma02g01792 Cma-Chr2:10004750 1.33E-22 wgd
Cma14g01723 Cma-Chr14:12673060 Cma06g01397 Cma-Chr6:9041588 6.61E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g528 . . . . . Bpe14g01197 . . . . . Cma14g01723 . Car14g01554 . Cpe08g00270 Cpe03g01446 . . . . . . . Cla06g00595 Cam06g0634 Cec06g0637 Cco06g0640 Clacu06g0620 Cmu06g0613 Cre06g1381 Cone14ag0860 Cone15ag0858 . . Lsi05g01618 . . . . . . . . . . . . Cmo06g01400 Cmo14g01762 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01723 Cma_Chr14 FPKM 21.351257 24.296062 2.985868 1.900583 1.067722 1.25165 0.561229 1.128453 1.553876 0.961392