Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01729 ATGGCATCACAGTTACAAACTCGCATCATTTTTTCCTTGCGGAACTCGATTCGTACCTGTTACTCGGCCAATCCTTTCTGCACCATTAGCGGATCGACCCAGGACTCCGAGTCCCCCGAACTTCCGGACTGGGTAAAGTTCTTCGATACTGGAAGCTCTTCTCGTTCAGATTCTGAGGACGACGTCTTCGTTATTCCTCCATTGGCGCATTGGGTCGAATCCCAAAGGCTCGAAGACCACAGTAAAGTTGGCAAGAAGAAACTCGGCGAGGCGAACGATAATGAAATCGACAAAATAAGTATGATGCTAAAGAATCGATACCCATCACCGGAAAATGTTGCAGAAACTTTGAATGGAAGAGCTTACCGGGTATCGAACACTTTGGTTGCACAGCTGCTGAAGAGATTTGGGAATGATTGGATCCCGGCTTATGGTGTTTTCAAGTGGGCAAAAGACCAAACACCTTATCGGCATTCACCTGAATCATACAACTCCATGGTTGACATCTTGGGGAGGGCAAAAAAGTTTAGACTTATGTGGGAGTTAGTGGATGAGATGAGTCATTTAGCTGCGTATGTGAGTCTGGAGACGATGAGTAAGGTTATTAGGAGGCTTGCGAGGGCTGGTAGGTATCAGGAGGCAATTGAGGCATTCCAGAGGATAGAGGAATACGGCGTTAGTAAAGACACAGCAGCCATGAATGTGTTGATGGATGCATTAGTCAAGGAGGGCAGTGTGGAAGATGCCCACAATGTGTTTGAAGAATTGAAGGGTTCAATACCTTTCAATTTGACGTCTTTCAATGTTCTAATACATGGGTACTGCAAAGCTAGGAAGCTAGATGAAGCATGGAAGATCATGGAAGAAGTTGAGAGACAGGGACTTGAACCTGATGTGATTTCCTACACTGCTTTCATTGAAGCTCATTGCCGCGACAAGGACTTCCGAAAGGTGGATAAGATTCTGGTGCTAATGGAACAAAAAGGGTGCAGGCCTAATGCAGTAACTTTCACCATTATAATGCAAACTTTAGGGAAGGCAAAACAGATAAATGAAGCTCTAAAGATATATGAGAAGATGAAGAAAGAGGGTTGTGTGCCTGATAGTTCATTCTACAGCTCCCTGATATTTATTCTTGGTAAAGCTGGTAGGCTCAAAGATGTTAAGGAGATAGTAGAGGACATGACAAACCAGGGGGTTAATCCAGACGTGTTGACATATAACACAATGATATCTTGTGCCTGTGCGCATTCGCAGGAAGAGACGGCTCTAAGATTGCTACGGAAAATGGAGGAGGATTCGTGCAAGCCAGACCTCAAGACTTACCACCCTTTATTGAAGATGTTCTGTAAAAAGAAGAGAATGAAGGTGCTGAAGTTTCTGTTAGATCATATGTTCAAGAATGATGTAAGTATTGAAGCTGGGACTTACTCGATTCTGGTGCGTGGGATGTGTGACACCGGAAAAATCCATCTTGCTTGCTCGTTCTTCGGGGAAATGGTGTCGAAGGGGATGGTTCCAAAAGACTCCACATTCAAGATGTTGAAGGAAGAACTTGAGAGGAAAGGTATGTCAGAAGAAACGAAAATCATTGAGAAGTTGATGCTCTGTGCAACAGAGCAAGATACGAGTTAA 1635 44.16 MASQLQTRIIFSLRNSIRTCYSANPFCTISGSTQDSESPELPDWVKFFDTGSSSRSDSEDDVFVIPPLAHWVESQRLEDHSKVGKKKLGEANDNEIDKISMMLKNRYPSPENVAETLNGRAYRVSNTLVAQLLKRFGNDWIPAYGVFKWAKDQTPYRHSPESYNSMVDILGRAKKFRLMWELVDEMSHLAAYVSLETMSKVIRRLARAGRYQEAIEAFQRIEEYGVSKDTAAMNVLMDALVKEGSVEDAHNVFEELKGSIPFNLTSFNVLIHGYCKARKLDEAWKIMEEVERQGLEPDVISYTAFIEAHCRDKDFRKVDKILVLMEQKGCRPNAVTFTIIMQTLGKAKQINEALKIYEKMKKEGCVPDSSFYSSLIFILGKAGRLKDVKEIVEDMTNQGVNPDVLTYNTMISCACAHSQEETALRLLRKMEEDSCKPDLKTYHPLLKMFCKKKRMKVLKFLLDHMFKNDVSIEAGTYSILVRGMCDTGKIHLACSFFGEMVSKGMVPKDSTFKMLKEELERKGMSEETKIIEKLMLCATEQDTS 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12704979 12706613 - CmaCh14G017290.1 Cma14g01729 308712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01729 544 Pfam PPR repeat family 265 311 IPR002885 -
Cma14g01729 544 Pfam PPR repeat 162 186 IPR002885 -
Cma14g01729 544 Pfam PPR repeat 233 258 IPR002885 -
Cma14g01729 544 Pfam PPR repeat 199 226 IPR002885 -
Cma14g01729 544 Gene3D Tetratricopeptide repeat domain 258 327 IPR011990 GO:0005515
Cma14g01729 544 Gene3D Tetratricopeptide repeat domain 96 257 IPR011990 GO:0005515
Cma14g01729 544 SUPERFAMILY TPR-like 138 363 IPR011990 GO:0005515
Cma14g01729 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Cma14g01729 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Cma14g01729 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Cma14g01729 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Cma14g01729 544 Pfam Pentacotripeptide-repeat region of PRORP 345 517 IPR033443 -
Cma14g01729 544 TIGRFAM PPR: pentatricopeptide repeat domain 476 507 IPR002885 -
Cma14g01729 544 TIGRFAM PPR: pentatricopeptide repeat domain 234 257 IPR002885 -
Cma14g01729 544 TIGRFAM PPR: pentatricopeptide repeat domain 300 334 IPR002885 -
Cma14g01729 544 TIGRFAM PPR: pentatricopeptide repeat domain 406 438 IPR002885 -
Cma14g01729 544 TIGRFAM PPR: pentatricopeptide repeat domain 372 404 IPR002885 -
Cma14g01729 544 TIGRFAM PPR: pentatricopeptide repeat domain 335 369 IPR002885 -
Cma14g01729 544 TIGRFAM PPR: pentatricopeptide repeat domain 162 187 IPR002885 -
Cma14g01729 544 TIGRFAM PPR: pentatricopeptide repeat domain 199 229 IPR002885 -
Cma14g01729 544 TIGRFAM PPR: pentatricopeptide repeat domain 266 299 IPR002885 -
Cma14g01729 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Cma14g01729 544 Gene3D Tetratricopeptide repeat domain 420 537 IPR011990 GO:0005515
Cma14g01729 544 Gene3D Tetratricopeptide repeat domain 328 419 IPR011990 GO:0005515
Cma14g01729 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 259 IPR002885 -
Cma14g01729 544 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 31 541 - -
Cma14g01729 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Cma14g01729 544 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 31 541 - -
Cma14g01729 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01729 - - - csv:101223103 906.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01729 Cma-Chr14:12704979 Cma15g00654 Cma-Chr15:3113406 1.62E-22 dispersed
Cma14g01729 Cma-Chr14:12704979 Cma18g00720 Cma-Chr18:6515218 1.90E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g533 . . . . . . . . . . . Cma14g01729 . Car14g01560 Sed08g1848 . . Bhi01g00782 Tan10g0806 Cmetu03g1308 . Hepe05g1573 . . . . . . . . . . . . . . . . . . . Bda11g00588 . . . . . . . Cmo14g01768 . . . . . . . . . . . . . Cla05g00522 Cam05g0575 Cec05g0585 Cco05g0583 Clacu05g0571 Cmu05g0541 Cre05g0610 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014430 1 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 0 0 1 1 1 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01729 Cma_Chr14 FPKM 4.219572 5.325774 4.600354 5.563497 4.801223 5.92868 4.343962 12.556492 11.378526 10.742122