Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01737 ATGGCCACTTTTTCTTCAGACATGGATGCCAATGTAAAAGCAATGATCAGACTCATTGAAGAAGATGCAGACTCCTTTGCAAGAAGAGCAGAAATGTACTATAACAAACGTCCAGAGCTTATAAAATTAGTTGAGGAGTTCTACCGAGCCTACCGTGCTTTAGCTGAACGATATGTCCCTGCAACTGCAGAGCTTCATGATGCACATGAAACCATGCCTCAAGCATTAGACAACCAAATGCCTCCTTCTGATGAGTCTTGTTCTGATGCTGAATCCCACACACCAGAAATCCACCTCCCAAATCATGCACTGCATGACAAAGGAGACTTGCACAAGGAGTTGGGGAGTTCATCATCAATGAATCAAAGCAGTTCTGTAAGTAAAGCGGGTTTGAAACAGCTCAATGAGATGTTTGCATCAGAGGGAAGCACTGAACCGCAAGTAGTTCGTCGTGAAGGTGAATTCGATGATCATAACTTGCATAGAGTGCCCTTTCAGTTAATAAGGAACATTTGTGTTCTCAAACCTCCGATTCTGTGGTTGTCTGAAAGAGATGAAAAATTGGATTCTGAACTTCAAAATTTAAGAAAAAGACTGAATGAGATGGAAGCTGAAAAGGAAGCTTTCTTTGTTAAATACCAGAATTCTTTGGAAAAGCTATCCAGCCTAGAGAAAGAACTTAGTTCCACTCAAAAAAATGCCAGTGGACTCGACGAACGAGCGAGCAAAGCTGAAATCGAAATAAAAATATTGAAGGAAGCCCTTCAAGATTTGAAAGCAGAGAAGAATGCAGGCCTTCTACAATATAATCAATGTTTGCAAAACATATCTAGCCTAGAAAAGCTATTATCTGACTCCCAACAAGATGCTGAAGGACATAAAGAGAGAACCGCTAAGGCCGAAATTGAAGCTCACAACCTTGAGCAACAACTTTCCAGATTAGCAGCTGAAAAGGAGGTCAGTCTTGTTCAGTATGAGCAATACCTAAAGAAGATATCTGCTTTAGAGAATAAAATCTCTGTTTCTGAAGCTTATGCAAGAACGCTCGATGAACGAATGAATCGTTCAGAGACTGAAGTGAAAGTATTGAAGAGAGCTCTTGATGATCTGAATGAAGAGAAGGAAATAGCATCTCGCCAGTATGAGCAGTGCTTGGAGAAAATTGCCAAGATGGAAACTGAAATATCTCATGCTCAAGATGAACTTGTGATGGCTAATGCAAAACTGGAGACAACAGAAGAAAGGTGTGCTCATTTGGAGCAGTCAAAGCATTCACTGCAGTTTGAAGCAGACAACCTTGTACACAAGATTGTTATTAAGGATCAAGAGCTTGCAGAAACACGAGATGAGTTGAAGAAACTGCAGACTCTAATGAATGAACTGACTTTTTCTTCCAATACTTCAATGAAGAATTTGGAGGATCAACTATCTGGCTTGAAGGAGATGAAAGAGAAGCTTGAAGAGGTTGTTTCTCAAAAAGAAGAGCAGGGCACGTTGCTCGATAAAGAGATTGATCATTTGAGAGAAGAAATTAAGGAATTGAGTGGAAGATACCAGGGCATAATGAGACAATTGGAAGCTGTAGGATTAGATCATCACTCCCTTGAATTCTCTATAAAGGAATTTCATGAGGAGAATGCCAAGCTGAGGGAGGCCTGTGAAAAGGACAGGAACAAGATTGAAGCACTTCATGAAAAACTCAGTTATATGGATGAACTTGCAAAGGAAAATTTGATCATCAAGGTATCTCTGGCTGAATTGAACGCGGAATTGGAGAGGCTAAGGGAGAAAGTCGAGGAGTCCGAGGAGCTTACCCGATTTATCTCGAGTGAAAAGAATTCTCTTGTTGCGGAGAAATCTTCCTTGCTTTCACAAATGCAGAATGTAACTGAGAATATGTTAGTACTTTTAGAGAAGAACACACTGCTGGAAAACTCCCTACTTGGTACAAATAAAGAGCTTGAAGGTTTAAGGGCAAAATCAAAGGGCTTAGAAGAATTCTGCCAGTTGATGAAGGATGAGAGGTCAAACCTTTTGAATGAAAGAGGCGCACTGGTGGCTCGGCTTGAAGAGATTGAACTCAAACTAGGAAACTTCGAAACGAGGTTTGCGAATCTAGAAGAAAAATATGCTGATCTGGAAAACGACAACAACTCTGCCTTACATCAAGTAGAAGAATTGAGGACTTCCCTTCTCACGGAAGAACAAGAGCGTACGGGTTACAAGCAGTCGACTACGGCCAGACTTGCTGGTTTGGAGAACCATGTCCTTAACCTACAAGAAGAAAGTAGAGTGAGTAAGGAAGAAGTTGAAGAGCTACTAGGCAAGGCTGTGAAGGCCCAGGTTGAAAGCTACATCTTGCAGAAGTTATCAGATAAAGTTATTGCTGAATTGGAAGGCGAAAATCTGGATCAACAAGCTGAAGTAGAATTTATGTACAATGAAATCAATAAATTAAGAGGAGGAATCCGTAAGGTATTAATGGCTCTTCAAATTGACCAAGCTGAAGAGAGGATTCTGATAGGGGATATTTTGGCTAGAATTGAGGATTTGAAAACGTCCGTGTTCAAAAACAAGGACGAGAAGCGGCGACTGCTCGTTCAGAACTCGGTTTTGTTAACTCTTCTCAAGCAACTGAGTTTAGAGAGTGAAGAACTGAAAGAAAACTTTATGCAGGAGTTAAAGAGCATGAAGGATCAACTAGCAATGCATGAACAAGACAAGCAGAATTTAATCATCCAGGAAACAATTGCTTTCAACATCCTATCGTCGATTTTCGAAAGCTTCAAAACCGAGAAATTCTTGGAAATCGAAAGGCTTGTTCAAGATATCTGGCATCTCCAAGTGGTTAATTCTGAGACAAGGGAAGAAGTTGTGAAGTTGGCAGAGAAATCTCAGTCAAAGGACACTGAAAATTTGCGTTTAAACGAATCGGTAGAGAAATTGGCTAAGGAGTTACATGAAACAAAAGCTTTGAATGATGAACTCAACCATCAAATTTTACTTGGAAATGATTTACTGAGGTCAGAGGCCCGAAAGCTGTCTGAAACAGAGGAGGAGTTTAAAAATTCACAAAACTTCAACATGAAACTGTGTGAAACTGTTGAGGAGCTCAAGATGGAAGGTGAAGAAACAATGATGATCAAACAGAATCTAGAGAATGAGAATCTTGAACTTAAAGAAAAGTGCTTAAGCCAGGAGAACCAGATTCAATGCCTCAGTGAAGTAAATGAAAATTTGAAATCTGAAGTTGATTTATTGAATGAGGAGATAGAGAAATGCAAGATTAGAGAGGAGTGTCTGAATCTAGAGCTACAGGAGAGGAGAGATGAGTCTGAGCTCTGGGAAGCTGAAACCACGGCATTTTACTTCGATAATCAAATCTCGTCGATACGGGAGGTTTTATACGAGAATAAGGTACACGAACTTGTCCATGCTTGTGAAAATGCTCGGGATGAGGACGCTGAAAAAGACATGGAGATTGAAAAACTCAGAGAAAGAGTAAGTTTCCTGGAAATTGAAGTAGGAGAAATGGAGGCACAGTTGTATGCATACAAGCCAGCCATAGCTGCTCTGAGGGAGGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAGGGCGAGGAAACCACAGCTCATGTTCATCAGGGGAGCTGTAAAGTCCACAAAGAAGAGATATTGGATTTGCAGGAGATTGGGGCCATGATAAAAGTAGTGGAGAAGGCTGTGATCGAGGAAAAGAAAAAACTTAACAAAGAAGCTGCTGAAGAACATGTCGAAGACCTCAGATCAGAAGGAACGTCGCATCGTGAAGCGACAACGGAGGATGGAATTACTGATAATCCTAAGGCAAGAAAGAACAAACCTGACAATGAAATGGTAATGAAAGATATTCCACTGGATCGTGAATCAGATAGTTCTTTCCAGAGAAGAAGCAGAAGGGAAAGTAGTGAGACCAATGAGCAAAATTGTGACCAGAATTTGATTGATAGCTCGCCACAAAGCCCCTCAGACCCACAAGTTGAGTACCCACAGTTGGAGCAATCCCCCAGCAGTAGCATTAGAGAACGAATCCGAAGAGGCCGAAAAGGAAAGATCTTAGAGAGAATTGATTCGTATGTCGATCAGTTGACAGGTCTTCTAACAAGTGTTCGAGATTTGAAAAAGAGAATTGAAGTGAACGTCTTCGAAATGGCTCCAAACAATGAATACGACACGGTTGAGAAACACGTAAAAGAAGTCGAGGAAGACATATTTCAGCAAATGAATATCAATGATCAACTGAAGCAGAATTTGGAACGCAGTCCCTCGTTTTTCGAGCGAATGCCATCAATAGAAATCGAGGCCACTGGAAACATCCCCTTAAGCAAACTAAGAGAGCAGGCACGAAGAGGATCTGTGAAGATACAACAACTACAGTTCGAGGTACAGAGCATTCAGCGCGTTGTGCTGAAACTCGAAGCCGAGAAGAAACCAAAAGGGAAGAACACATTACCGGGGAGTAGTAAACCTCGGGTTATTCTGAGAGATTTCATCTGCAGAAGCGGAAAACGGAGGGAAAGATGGAAGAAACCATGTTCTTGTGGATGTATGAGACCTTCTACGCATTTAGACTGA 4617 41.11 MATFSSDMDANVKAMIRLIEEDADSFARRAEMYYNKRPELIKLVEEFYRAYRALAERYVPATAELHDAHETMPQALDNQMPPSDESCSDAESHTPEIHLPNHALHDKGDLHKELGSSSSMNQSSSVSKAGLKQLNEMFASEGSTEPQVVRREGEFDDHNLHRVPFQLIRNICVLKPPILWLSERDEKLDSELQNLRKRLNEMEAEKEAFFVKYQNSLEKLSSLEKELSSTQKNASGLDERASKAEIEIKILKEALQDLKAEKNAGLLQYNQCLQNISSLEKLLSDSQQDAEGHKERTAKAEIEAHNLEQQLSRLAAEKEVSLVQYEQYLKKISALENKISVSEAYARTLDERMNRSETEVKVLKRALDDLNEEKEIASRQYEQCLEKIAKMETEISHAQDELVMANAKLETTEERCAHLEQSKHSLQFEADNLVHKIVIKDQELAETRDELKKLQTLMNELTFSSNTSMKNLEDQLSGLKEMKEKLEEVVSQKEEQGTLLDKEIDHLREEIKELSGRYQGIMRQLEAVGLDHHSLEFSIKEFHEENAKLREACEKDRNKIEALHEKLSYMDELAKENLIIKVSLAELNAELERLREKVEESEELTRFISSEKNSLVAEKSSLLSQMQNVTENMLVLLEKNTLLENSLLGTNKELEGLRAKSKGLEEFCQLMKDERSNLLNERGALVARLEEIELKLGNFETRFANLEEKYADLENDNNSALHQVEELRTSLLTEEQERTGYKQSTTARLAGLENHVLNLQEESRVSKEEVEELLGKAVKAQVESYILQKLSDKVIAELEGENLDQQAEVEFMYNEINKLRGGIRKVLMALQIDQAEERILIGDILARIEDLKTSVFKNKDEKRRLLVQNSVLLTLLKQLSLESEELKENFMQELKSMKDQLAMHEQDKQNLIIQETIAFNILSSIFESFKTEKFLEIERLVQDIWHLQVVNSETREEVVKLAEKSQSKDTENLRLNESVEKLAKELHETKALNDELNHQILLGNDLLRSEARKLSETEEEFKNSQNFNMKLCETVEELKMEGEETMMIKQNLENENLELKEKCLSQENQIQCLSEVNENLKSEVDLLNEEIEKCKIREECLNLELQERRDESELWEAETTAFYFDNQISSIREVLYENKVHELVHACENARDEDAEKDMEIEKLRERVSFLEIEVGEMEAQLYAYKPAIAALREDVESLKHIVLPQGEETTAHVHQGSCKVHKEEILDLQEIGAMIKVVEKAVIEEKKKLNKEAAEEHVEDLRSEGTSHREATTEDGITDNPKARKNKPDNEMVMKDIPLDRESDSSFQRRSRRESSETNEQNCDQNLIDSSPQSPSDPQVEYPQLEQSPSSSIRERIRRGRKGKILERIDSYVDQLTGLLTSVRDLKKRIEVNVFEMAPNNEYDTVEKHVKEVEEDIFQQMNINDQLKQNLERSPSFFERMPSIEIEATGNIPLSKLREQARRGSVKIQQLQFEVQSIQRVVLKLEAEKKPKGKNTLPGSSKPRVILRDFICRSGKRRERWKKPCSCGCMRPSTHLD 1538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12731630 12736519 + CmaCh14G017370.1 Cma14g01737 308720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01737 1538 Coils Coil 539 566 - -
Cma14g01737 1538 Coils Coil 276 317 - -
Cma14g01737 1538 Coils Coil 185 261 - -
Cma14g01737 1538 Coils Coil 1469 1489 - -
Cma14g01737 1538 MobiDBLite consensus disorder prediction 74 124 - -
Cma14g01737 1538 Coils Coil 1245 1265 - -
Cma14g01737 1538 MobiDBLite consensus disorder prediction 1251 1320 - -
Cma14g01737 1538 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 458 790 - -
Cma14g01737 1538 MobiDBLite consensus disorder prediction 1321 1352 - -
Cma14g01737 1538 PANTHER PROTEIN NETWORKED 4A 1351 1536 - -
Cma14g01737 1538 SUPERFAMILY Tropomyosin 240 456 - -
Cma14g01737 1538 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 910 1326 - -
Cma14g01737 1538 Coils Coil 689 730 - -
Cma14g01737 1538 MobiDBLite consensus disorder prediction 1251 1360 - -
Cma14g01737 1538 Coils Coil 1147 1181 - -
Cma14g01737 1538 Coils Coil 1411 1431 - -
Cma14g01737 1538 Coils Coil 869 914 - -
Cma14g01737 1538 Coils Coil 1035 1104 - -
Cma14g01737 1538 Coils Coil 346 429 - -
Cma14g01737 1538 Coils Coil 972 999 - -
Cma14g01737 1538 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1351 1536 - -
Cma14g01737 1538 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 7 460 - -
Cma14g01737 1538 PANTHER PROTEIN NETWORKED 4A 789 911 - -
Cma14g01737 1538 PANTHER PROTEIN NETWORKED 4A 458 790 - -
Cma14g01737 1538 Coils Coil 469 524 - -
Cma14g01737 1538 MobiDBLite consensus disorder prediction 89 113 - -
Cma14g01737 1538 Gene3D - 407 578 - -
Cma14g01737 1538 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 789 911 - -
Cma14g01737 1538 Pfam KIP1-like protein 6 58 IPR011684 GO:0003779
Cma14g01737 1538 PANTHER PROTEIN NETWORKED 4A 910 1326 - -
Cma14g01737 1538 PANTHER PROTEIN NETWORKED 4A 7 460 - -
Cma14g01737 1538 Coils Coil 742 776 - -
Cma14g01737 1538 Coils Coil 437 464 - -
Cma14g01737 1538 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 1 65 IPR011684 GO:0003779
Cma14g01737 1538 Coils Coil 795 815 - -
Cma14g01737 1538 Coils Coil 577 611 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01737 - - - cmax:111479018 2777.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01386 Cma14g01737 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01788 Cma-Chr2:9977935 Cma14g01737 Cma-Chr14:12731630 1.13E-28 dispersed
Cma06g01386 Cma-Chr6:8997730 Cma14g01737 Cma-Chr14:12731630 5.45E-177 dispersed
Cma08g00328 Cma-Chr8:1876259 Cma14g01737 Cma-Chr14:12731630 6.88E-49 dispersed
Cma14g01737 Cma-Chr14:12731630 Cma17g01200 Cma-Chr17:8283123 7.28E-49 dispersed
Cma06g01382 Cma-Chr6:8995171 Cma14g01737 Cma-Chr14:12731630 2.71E-53 transposed
Cma06g01383 Cma-Chr6:8996432 Cma14g01737 Cma-Chr14:12731630 1.11E-51 transposed
Cma06g01384 Cma-Chr6:8996959 Cma14g01737 Cma-Chr14:12731630 1.82E-50 transposed
Cma14g01737 Cma-Chr14:12731630 Cma06g01380 Cma-Chr6:8991761 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01737 Cma_Chr14 FPKM 1.47732 1.837244 1.596715 1.300004 0.635787 0.793745 0.790209 1.069268 1.226682 1.18828