Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01740 ATGAAAACCTCCAGCTTCCCTCTCCCAAAATCTCTCCTCCTCGTCTCCATCCTCATCCTCCTCTCCAACCCTTCATATCAAGCGACTCCCCCGCCGCCATCGCCGCCGCAGCCGCCATTTCTCCCTAACCCGAGGCTTCTCAAGGCCTACACTGCTCTCCAAGCTTGGAAACATGCCATCACTGCCGACCCAAACAACTTCACCGCTGACTGGTACGGCCCCAACGTATGCAACTACTCCGGCATTTTCTGTGCCCCCGATCCCGACGACCCCTACATCCTCACCGTCGGCGGGATCGACCTCAACCACGCCAACCTGTCGGGCACCCTACCCGACGACCTCGGCCTCCTGACCGACCTTGCTCTGTTCCACATCAACTCCAACCGCTTCTGCGGTACTATCCCCGAGTCCTTCCGATGCCTCACTCGCCTATTTGAGCTCGACCTCAGCAACAATGGCTTCTCCGGCGAATTCCCTTCTGCAATTCTCTCTCTTGCTGCTCTCAAATTCCTCGATATTCGATTCAACAAATTCCATGGGGATCTCCCTTCTCCCCTGTTTGACATGAAACTCGATGCTCTGTTCATCAATAATAACGCTTTCAAATTCTCCTTACCGGAAAACATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGCCTCCCCTCCAGTTTATCCAACATGAAGAATACACTCAATGAAATTATAATCACGAATAGTGGGTTGAATGGGTGTTTGCCGCCGGAAATTGGGTCGTTGAGCAATCTCGCCGTCTTCGATGTCAGTGACAACAATCTCGTCGGATCGCTGCCGGAGACGATGGCCGGAATGAAGAAATTGGAGCAGCTAAATGTCGCACATAACCAATTATCCGGTGAAATTCCGGCAAGTATTTGCTCGTTGCCAAAATTGCAGAATTTCACGTACTCGTATAATTTCTTCTGCAGTGAGCCGTCAGTGTGCCTGAAACTTCAGGCCAGCGATGACCAGAAAAATTGTTTGCCGGAAAGGCCACTGCAACGTTCGCCGGAGGAATGTAAAGCTTTCTACTCTTACTCTGTTGACTGCGGCGTCTTTGGTTGTACTCATCGGCCGCCACCGCCACCACCTCCTCCTCCTCCGCCCCCGCCCTCGCCTCCTCCTCCACCTCCTCCACCGCCCCCTCCCCCTCCCCCTCCTCCGCCACCGCCACCACCTCCTCCTCCTCCGCCCCCGCCCTCGCCTCCTCCTCCACCTCCTCCACCGCCCCCTCCCCCTCCCCCTCCTCCGCCACCGCCACCACCTCCTCCTCCTCCGCCCCCGCCCTCGCCTCCTCCTCCACCTCCTCCACCGCCCCCTCCCCCTCCCCCTCCTCCGCCACCGCCACCACCTCCTCCTCCTCCGCCCCCGCCCTCGCCTCCTCCTCCACCTCCTCCACCGCCCCCTCCCCCTCCCCCTCCTCCGCCACCGCCACCACCGCCACCTCCACCGCCGCCACCGCCGCCACCGTATTATCAGTATCCGTAG 1527 58.15 MKTSSFPLPKSLLLVSILILLSNPSYQATPPPPSPPQPPFLPNPRLLKAYTALQAWKHAITADPNNFTADWYGPNVCNYSGIFCAPDPDDPYILTVGGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTIPESFRCLTRLFELDLSNNGFSGEFPSAILSLAALKFLDIRFNKFHGDLPSPLFDMKLDALFINNNAFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMKNTLNEIIITNSGLNGCLPPEIGSLSNLAVFDVSDNNLVGSLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPSVCLKLQASDDQKNCLPERPLQRSPEECKAFYSYSVDCGVFGCTHRPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYYQYP 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12740774 12742300 - CmaCh14G017400.1 Cma14g01740 308723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01740 508 SUPERFAMILY L domain-like 49 330 - -
Cma14g01740 508 Pfam Leucine rich repeat 239 297 IPR001611 GO:0005515
Cma14g01740 508 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 20 378 - -
Cma14g01740 508 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 20 378 - -
Cma14g01740 508 Gene3D Ribonuclease Inhibitor 211 335 IPR032675 -
Cma14g01740 508 Gene3D Ribonuclease Inhibitor 49 210 IPR032675 -
Cma14g01740 508 MobiDBLite consensus disorder prediction 464 483 - -
Cma14g01740 508 MobiDBLite consensus disorder prediction 373 454 - -
Cma14g01740 508 Pfam Leucine rich repeat N-terminal domain 51 84 IPR013210 -
Cma14g01740 508 PRINTS Proline rich extensin signature 371 383 - -
Cma14g01740 508 PRINTS Proline rich extensin signature 386 402 - -
Cma14g01740 508 PRINTS Proline rich extensin signature 406 418 - -
Cma14g01740 508 PRINTS Proline rich extensin signature 418 439 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01378 Cma14g01740 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00680 Cma-Chr10:3085559 Cma14g01740 Cma-Chr14:12740774 2.61E-101 dispersed
Cma11g01919 Cma-Chr11:12664848 Cma14g01740 Cma-Chr14:12740774 2.72E-122 dispersed
Cma14g01740 Cma-Chr14:12740774 Cma17g00446 Cma-Chr17:2660615 3.36E-104 dispersed
Cma14g01740 Cma-Chr14:12740774 Cma06g01378 Cma-Chr6:8987856 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01740 - - cmax:111479258 721.079