Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01752 ATGCAGCTTCTTAACTCTGAAGAAACGGTCGATGACTCCTCAGAAAGCGGCCTTGAGGAGGCACGGAATTTGAAGGCTTCTGAGTTGGCTTCGTTTGAGGATGACAGTGGAAATGATGCAGATGATTTGGTTCTCGATGTCTCGGGGAGAAAGTTGGCTTCCAATTTCTTGGAGGGTTCCAATAGCTCAGTGAAGGGTCTGTACATATTTCGGAATGCGTTAAATTTGATCCCGAAACCAGTTGGCGACTTTAGCGAATTGAGAAGGCTTCAGTTCTTCGGAAACGAGATTAACTTGTTTCCGCCAGAGTTGAAGAACTTTGTCGGGTTGGAATGCTTACAGGTGAAGTTATCATCACCGGGTTTTGGTGGTTTATCATTACACAAACTAAAGGGCCTGAAGGAGCTCGAGCTATCGAAGATTCCTCCTAAACCTTCCTCGTTTTCAATTCTTAATGAAGAGCCGTCCAGCAGAATAGGCTATTTGAATGCGTTGATATCCTTGAGAGTTGCTAATAACAATTTGGTGGAACTGCCTCCAGTACAATAA 549 44.26 MQLLNSEETVDDSSESGLEEARNLKASELASFEDDSGNDADDLVLDVSGRKLASNFLEGSNSSVKGLYIFRNALNLIPKPVGDFSELRRLQFFGNEINLFPPELKNFVGLECLQVKLSSPGFGGLSLHKLKGLKELELSKIPPKPSSFSILNEEPSSRIGYLNALISLRVANNNLVELPPVQ 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12787180 12788156 + CmaCh14G017520.1 Cma14g01752 308735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01752 182 PANTHER BNAC08G43810D PROTEIN 61 153 - -
Cma14g01752 182 Gene3D Ribonuclease Inhibitor 43 181 IPR032675 -
Cma14g01752 182 MobiDBLite consensus disorder prediction 1 20 - -
Cma14g01752 182 SUPERFAMILY L domain-like 43 180 - -
Cma14g01752 182 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 61 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01752 - - - csv:101218031 241.121
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01365 Cma14g01752 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01752 Cma-Chr14:12787180 Cma06g01365 Cma-Chr6:8921012 1.40E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016932 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01752 Cma_Chr14 FPKM 0.0 0.0 0.771337 0.443462 1.262669 1.452003 1.382404 0.0 0.0 0.0