Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01762 ATGGACACGCGATTTGTCGGTCTTTTCCTGTGGGATACGATGGGGGCTTTCATGTCGAGATTCTGGTTCATGTTATTTCCGGCAAAAGAATACAAGATCGTGGTGGTTGGGTTGGATAATGCGGGAAAGACGACGACTCTTTACAAATTGCACTTGGGAGAGGTTGTTACTACCCATCCTACCGTGGGAAGCAATGTTGAAGAGCTTGTGTACAAGAACATTCGATTCGAGGTATGGGATCTTGGTGGGCAAGACAGGCTTAGGACATCATGGGCAACATATTACCGCGGAACGCATGCAGTGATTGTTGTGATAGACAGCACAGATAGAGCAAGAATCACCATCATGAAGGAGGAGCTGTTCAGACTACTCGGTCATGAAGATCTTCAGCAATCTGTGGTGCTGGTCTTTGCAAACAAACAGGATCTTAAGGATGCCATGACTCCCGTTGAAATCACAGATGCTCTTTCACTCCACAGCATTAAGAATCACGACTGGCACATTCAAGCCTGCTCTGCCCTCACTGGAGACGGTCTATACGATGGTCTCGGATGGATTGCACAGCACGTTACCGGCAAAGCGACTAGTTGA 591 47.72 MDTRFVGLFLWDTMGAFMSRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEVWDLGGQDRLRTSWATYYRGTHAVIVVIDSTDRARITIMKEELFRLLGHEDLQQSVVLVFANKQDLKDAMTPVEITDALSLHSIKNHDWHIQACSALTGDGLYDGLGWIAQHVTGKATS 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12823450 12825510 - CmaCh14G017620.1 Cma14g01762 308745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01762 196 SMART arf_sub_2 14 194 - -
Cma14g01762 196 PANTHER ADP-RIBOSYLATION FACTOR C1 14 195 - -
Cma14g01762 196 TIGRFAM small_GTP: small GTP-binding protein domain 29 158 IPR005225 GO:0005525
Cma14g01762 196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 191 IPR027417 -
Cma14g01762 196 ProSiteProfiles small GTPase Arf family profile. 24 190 - -
Cma14g01762 196 Gene3D - 18 196 IPR027417 -
Cma14g01762 196 SMART sar_sub_1 14 190 IPR006689 GO:0003924|GO:0005525
Cma14g01762 196 CDD Arl5_Arl8 16 189 - -
Cma14g01762 196 PRINTS GTP-binding SAR1 protein signature 60 84 IPR006689 GO:0003924|GO:0005525
Cma14g01762 196 PRINTS GTP-binding SAR1 protein signature 132 153 IPR006689 GO:0003924|GO:0005525
Cma14g01762 196 PRINTS GTP-binding SAR1 protein signature 32 55 IPR006689 GO:0003924|GO:0005525
Cma14g01762 196 PRINTS GTP-binding SAR1 protein signature 87 112 IPR006689 GO:0003924|GO:0005525
Cma14g01762 196 PANTHER ADP RIBOSYLATION FACTOR-RELATED 14 195 IPR024156 GO:0005525
Cma14g01762 196 SMART rab_sub_5 31 193 - -
Cma14g01762 196 Pfam ADP-ribosylation factor family 27 189 IPR006689 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01762 K07950 ARL5B; ADP-ribosylation factor-like protein 5B - csv:101220253 364.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01762 Cma-Chr14:12823450 Cma17g01012 Cma-Chr17:7365651 4.70E-67 dispersed
Cma14g01762 Cma-Chr14:12823450 Cma07g00682 Cma-Chr7:2999895 5.64E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g583 . Blo12g00348 Bda03g00857 . Bpe04g00810 Bpe14g01217 Bma04g00757 Bma05g01086 . . . Cma14g01762 Car06g01176 Car14g01588 Sed02g1358 Cpe08g00297 Cpe03g01478 Bhi01g00744 Tan10g0770 Cmetu06g0372 . Hepe05g1599 . Lcy11g1596 . . . . . . . . . . Cone4ag0280 Lsi05g01651 . . Cme06g00560 Blo02g00594 . . Bda13g00096 Bpe05g00876 . . . . Cmo06g01367 Cmo14g01802 . . . . . . . . . . . . . Cla05g00498 Cam05g0546 Cec05g0559 Cco05g0557 Clacu05g0543 Cmu05g0515 Cre05g0583 . Csa03g01277 Chy06g00529 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006516 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01762 Cma_Chr14 FPKM 37.828053 40.301231 24.499748 22.411369 26.070938 28.796577 25.932638 24.238256 29.248884 25.552565
Cma14g01762 Cma_Chr00 FPKM 7.641565 9.439637 2.729794 3.624494 3.676347 3.928031 4.057397 6.624378 5.414463 5.624988
Cma14g01762 Cma_Chr00 FPKM 8.86751 11.724598 3.093228 4.045916 4.136559 4.795749 4.953413 6.669563 5.983497 6.64464