Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01768 ATGAAGCCAGGGCTCCGGCCCACTCCGGCTGCAGTTCCGCGATCTGCCGGCGCCACCCTTCTCGGGAAGTACGGCTTAGGCCGTCTTCTCGGCCGTGGAAGCTTCGCCAAAGTCTACCAAGCAGTTTCCTTAGCCGATAATTCCATCGTCGCCGTCAAAATTATCGACAAATCCAAAACCGTCGGCGCAACCCTTGAACGATGTATAGTCCGGGAGATCGCCGCCATGCGCCGACTCGATCGCCACCCAAACATCCTGAAAATCCACGAAGTCATGGCCACCAAGTCCAAAATCTACCTGGTGGTCGAATTCGCCGCCGGAGGCGAACTCTTGGCGAAAATCTCCCGACGTGGACGTTTCACCGAAACCGTTGCTCGCCGGTACTTTCAACAACTCGTCTCGGCCCTGAAATTCTGCCATGAAAATGGCGTTGTTCACCGCGATGTGAAACCGCAGAATCTTTTGCTGGACGAACAGGGCAATTTGAAAATCTCCGATTTTGGACTCTCTGCTTTACCCGAAAAGCTCAAAGATGAATTGCTTCACACGGCTTGCGGAACTCCGGCATACTCAGCGCCGGAGGTCATGATCCGACGCGGAAACAGGGGATATGACGGAGGAAAGGCGGACGCCTGGTCTTGTGGAGTGATTTTATTCGTAATGCTCTCTGGGTTTCTCCCTTTCGAGGACAGTAACCTTGCGGCAATGTACAAGAAGATCCACCGGCGAGAATTTGAAATCCCTAAATGGATTTCGAAACCTGTCCGATTCTTAATTTATCACCTCCTCGATCCGAATCCCGAAACGAGGATGAGCATTGAAGCGCTAATGCAAAACCCTTGGTTCAAGAAATCGCTGGCACGGAAACAGAGTAATGAGAGCCTGATGCAGTCAATGAAGAATTATCGATTGGGGAAAGAGAGGGGAATAGGGGAAATGAACGCGTTCGATATAATTTCGATGTCATCGGGGTTGGATTTATCGGGGCTGTTTGAAACGACGGAGAAGAGGGCGGAGAGGAGGTTTACGTCGAGGGCGACGGTGAGGGAGGTCGAAGAGAGGGTGAGGGAGATCGGCGGGGTGTTGGGGTATGAAGTGGAGGCGGAGGCTGTGGCGAAGGGAGGGGCGATCGGAATGGGGAAGGGGAGGGTGGTGGTAGTGGTGGAAGTGGTGGAGATGGCGGTGGCGCTGGTGACTTTGACGATGGTGGAGGTGAGGGTGATAAAAGGAGGGGAGGAGTTCGAAGAGTTTCATTGGAGATGCTTTGAAGCTAAACTTGAAGGATTTGCTGTTCCATGGCAGATGAAATGTAATCTGTGA 1320 52.73 MKPGLRPTPAAVPRSAGATLLGKYGLGRLLGRGSFAKVYQAVSLADNSIVAVKIIDKSKTVGATLERCIVREIAAMRRLDRHPNILKIHEVMATKSKIYLVVEFAAGGELLAKISRRGRFTETVARRYFQQLVSALKFCHENGVVHRDVKPQNLLLDEQGNLKISDFGLSALPEKLKDELLHTACGTPAYSAPEVMIRRGNRGYDGGKADAWSCGVILFVMLSGFLPFEDSNLAAMYKKIHRREFEIPKWISKPVRFLIYHLLDPNPETRMSIEALMQNPWFKKSLARKQSNESLMQSMKNYRLGKERGIGEMNAFDIISMSSGLDLSGLFETTEKRAERRFTSRATVREVEERVREIGGVLGYEVEAEAVAKGGAIGMGKGRVVVVVEVVEMAVALVTLTMVEVRVIKGGEEFEEFHWRCFEAKLEGFAVPWQMKCNL 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12842347 12843666 + CmaCh14G017680.1 Cma14g01768 308751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01768 439 Pfam NAF domain 313 367 IPR004041 GO:0007165
Cma14g01768 439 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01768 439 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165
Cma14g01768 439 PANTHER SERINE/THREONINE KINASE 16 435 - -
Cma14g01768 439 CDD CIPK_C 314 420 - -
Cma14g01768 439 Gene3D Phosphorylase Kinase; domain 1 26 109 - -
Cma14g01768 439 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01768 439 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 435 - -
Cma14g01768 439 Pfam Protein kinase domain 27 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01768 439 Gene3D Kinase associated domain 1, KA1 309 430 - -
Cma14g01768 439 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Cma14g01768 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Cma14g01768 439 Gene3D Transferase(Phosphotransferase) domain 1 110 307 - -
Cma14g01768 439 SUPERFAMILY Protein kinase-like (PK-like) 21 297 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01115 Cma14g01768 CCT
Cma14g01768 Cma17g00195 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01768 Cma-Chr14:12842347 Cma02g00704 Cma-Chr2:4273796 2.01E-125 dispersed
Cma14g01768 Cma-Chr14:12842347 Cma17g00195 Cma-Chr17:1022473 0 wgd
Cma14g01768 Cma-Chr14:12842347 Cma08g01115 Cma-Chr8:6916716 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69102 PF00069 Pkinase 3.00E-70 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01768 K12761 - csv:101217555 685.641