Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01778 ATGGCTCTAATACACAGTCGTTTATGCCAAGCCACGAACTTCTTCGATACATTTCAAACTTCCTTCCCTGAATTCCATGGCTCTCGCGTTTTCCTCAAGTACGGTTCGTCGATTGTCTTCAGAAACCGCTCTTTCTGCTCTCCGTTTTATGCGTTTACGACGGAAAAATGTTCCAATCGAATTCCGTATGGGAGTTTAAGCACGCAAACACCCATTTCCAGATATGATTTGAGGAGGAATTTCTGTCGTGCTAATTGGATAGATAGGTGGAACGAAACCGCGAAACAAAATCGTCCAAAACCACCTCGCGCCGTGTTGGACTATCCCAGTAGCGATGACAATGAAGTTTCTATTTCACGTTCAGATTTTTCGAAGAGTTATAGAGGTGTTAGTAGTAGGATTGATGATGATGGAAGAGGGGGAAGTACAATGGAGAAGATTGTGAGAAAATTGAAGAAATTTGGGTACATGGACGATGAGAATAAAGAGAAGGGGCAAGAGAGAGCCGCCATTGAAAAGGGGTCCGTGGAGGACATATTCTATGTTGAGGAAGGAATGTTGCCTAATACTCGAGGTGGGTTTTCTAAGGAATCTCCATTGGGAGTTGAGGGCATGTTTGGAAGTAATGGAGAGGTTAGATTTCCATGGGAGAAGCCAAAAGAAAGGGAATATGCAGATGGGGCTTCAACAAGGAGAAGGAACATGGCATCTTTGGCAGAATTGACTCTTCCTGAGTCAGAATTGAGAAGGCTGAGGAACTTGACATTCATTAAAAAGCACAAGATGAAGATAGGCGGTGGAGGAGTGACTCAGGCTGTTGTGGATATCATTCATGAAAAATGGAAATCTTCTGAGATTGTGAGGCTTAAAATTGAAGGTCCTCCTGCGCTTAACATGAAAAGGATGCACGAGATATTGGAGAGAAAAACTGGTGGACTGGTTATTTGGAGGTCGGGAACTTCATTGTCTCTATATAGAGGTGTAAGCTATGAGCTTCCTGAAGCACCACAATTTAACAAATGGGTTTACAAGAGAAATGAGATAACTCCTGTTCCTGAAACGGATGTCAGTACAATAGTTCCTTCCGAATCTTCTTCTGATAGTAATGTACACGAGCCACGAGAAAAAAGAGCAGAAACTTCGACAGAGGGTGAACAGTGCAGCGAACAATTGACAGAAGTACAAGTGAATTATGAGGATGAAGTAGACAAATTACTGGATGGTTTGGGTCCAAGATACACAGACTGGCCAGGATTGGATCCTTTACCGGTCGATGCAGATATGCTCCCGGGAGTAGTTCCTGATTACAAACCTCCATTTAGAATTCTTCCCTATGGAGTGAGATCTTCTCTTGGAGTGAAGGAGGCTACAGCCTTGAGAAGACTTGCCAGAAGACTTCCTCCTCATTTTGCACTAGGCCGAAACAGGCAGCTTCAAGGTTTAGCCATCGCAATGGCTAAATTGTGGGAACGAAGTTCAATTGCGAAAATTGCACTGAAACGAGGTGTGCAGCTAACTACTAGTGAGAGAATGGCTGAAGAGATCAAGAAATTGACAGGGGGCATGCTTCTGTCAAGAAACAAAGACTTTCTGGTATTCTATAGGGGAAAGAATTTCTTGTCACCTGAGGTCACTGAAGCTTTGTTAGAAAGGGAGAGGTTGGCGAAGTCTCTACAAGATGAAGAAGAACAGGCAAGGTTGAAAGCATCAGCCCTTGTGGTTCCTGGCCTTGAGAAAACAGAGCAATCTGGCACTGCTGGTTCTCTAGAGGAAACACTAGATGCTGATGCTAAATGGGGAAAGAATCTGGACGACCAGCACAAGGAAAAAGTAATGCGGGACGCCGAACGATTGAGACATGCCGAACTTGTTAGGAAGCTGGAACGGAAGCTTGCTATTGCTGAAAGAAAGTTGGTGAAAGCTGAACGAGCGTTATCTAAGGTAGAAGCGTTTATGACACCAGCTCAGCGGCAGGCAGAACCTGATAGCATAACTGAGGAGGAAAGGTTTATGTTTCGTAAGCTTGGTCTACGAATGAAAGCTTTCTTGCTTCTAGGTCGGCGTGAAGTTTTCGATGGTACGGTGGAAAACATGCACTTGCATTGGAAGTATCGTGAATTGGTGAAGATCATGATAAAAGCTAATTCTTTTGACCATGTCAAAAAGATAGCTTTGCAACTCGAAGCTGAGAGTGGGGGTGTCCTAGTTTCTATTGACAAAGTCTCCAAATCGTATGCGATAATCGTTTATCGAGGGAGGGATTATCAACGACCTTCTTTGCTGAGACCCAAGAATCTTTTGACAAAGAGGAAGGCTCTAGCACGGTCGATCGAGCTTCAAAGGCACAAGGCTTTGCTGAGACATATATCAGCACTGCAGAGTAGCGTGGACAAACTAAGATCCGAAATCGAACAAATGGAGACGGTGAAAGACGGAGGGGATGAAGTATTATACAATACACTGGATTCTGCTTATCCTACTGACAATGATACGGAGGAAGAAGACTTCGATACATATATGGAGGCATATGGCTCGGATAGTGATGCTGAAGATCAAGAGAATATCATGGCTGCTGACGATTACATGGAAGGGGATTTTCCACATGGAATCCAGGTACAAGAATCTGAGCTTGAATATGAGAGAGGTGGCTGA 2652 44.0 MALIHSRLCQATNFFDTFQTSFPEFHGSRVFLKYGSSIVFRNRSFCSPFYAFTTEKCSNRIPYGSLSTQTPISRYDLRRNFCRANWIDRWNETAKQNRPKPPRAVLDYPSSDDNEVSISRSDFSKSYRGVSSRIDDDGRGGSTMEKIVRKLKKFGYMDDENKEKGQERAAIEKGSVEDIFYVEEGMLPNTRGGFSKESPLGVEGMFGSNGEVRFPWEKPKEREYADGASTRRRNMASLAELTLPESELRRLRNLTFIKKHKMKIGGGGVTQAVVDIIHEKWKSSEIVRLKIEGPPALNMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKWVYKRNEITPVPETDVSTIVPSESSSDSNVHEPREKRAETSTEGEQCSEQLTEVQVNYEDEVDKLLDGLGPRYTDWPGLDPLPVDADMLPGVVPDYKPPFRILPYGVRSSLGVKEATALRRLARRLPPHFALGRNRQLQGLAIAMAKLWERSSIAKIALKRGVQLTTSERMAEEIKKLTGGMLLSRNKDFLVFYRGKNFLSPEVTEALLERERLAKSLQDEEEQARLKASALVVPGLEKTEQSGTAGSLEETLDADAKWGKNLDDQHKEKVMRDAERLRHAELVRKLERKLAIAERKLVKAERALSKVEAFMTPAQRQAEPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDHVKKIALQLEAESGGVLVSIDKVSKSYAIIVYRGRDYQRPSLLRPKNLLTKRKALARSIELQRHKALLRHISALQSSVDKLRSEIEQMETVKDGGDEVLYNTLDSAYPTDNDTEEEDFDTYMEAYGSDSDAEDQENIMAADDYMEGDFPHGIQVQESELEYERGG 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12873572 12877909 + CmaCh14G017780.1 Cma14g01778 308761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01778 883 Coils Coil 789 809 - -
Cma14g01778 883 MobiDBLite consensus disorder prediction 354 390 - -
Cma14g01778 883 MobiDBLite consensus disorder prediction 368 383 - -
Cma14g01778 883 SUPERFAMILY YhbY-like 451 543 IPR035920 -
Cma14g01778 883 SUPERFAMILY YhbY-like 242 331 IPR035920 -
Cma14g01778 883 Coils Coil 544 564 - -
Cma14g01778 883 MobiDBLite consensus disorder prediction 93 117 - -
Cma14g01778 883 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 2 878 IPR045278 GO:0000375|GO:0003729
Cma14g01778 883 SMART CRS1_YhbY_2 451 535 IPR001890 GO:0003723
Cma14g01778 883 SMART CRS1_YhbY_2 664 751 IPR001890 GO:0003723
Cma14g01778 883 SMART CRS1_YhbY_2 243 326 IPR001890 GO:0003723
Cma14g01778 883 Pfam CRS1 / YhbY (CRM) domain 243 326 IPR001890 GO:0003723
Cma14g01778 883 Pfam CRS1 / YhbY (CRM) domain 454 535 IPR001890 GO:0003723
Cma14g01778 883 Pfam CRS1 / YhbY (CRM) domain 665 751 IPR001890 GO:0003723
Cma14g01778 883 ProSiteProfiles CRM domain profile. 241 337 IPR001890 GO:0003723
Cma14g01778 883 ProSiteProfiles CRM domain profile. 662 762 IPR001890 GO:0003723
Cma14g01778 883 SUPERFAMILY YhbY-like 664 761 IPR035920 -
Cma14g01778 883 ProSiteProfiles CRM domain profile. 449 546 IPR001890 GO:0003723
Cma14g01778 883 Coils Coil 617 644 - -
Cma14g01778 883 PANTHER CRM-DOMAIN CONTAINING FACTOR CFM3A, CHLOROPLASTIC/MITOCHONDRIAL 2 878 IPR033262 GO:0000373
Cma14g01778 883 Gene3D - 663 765 IPR035920 -
Cma14g01778 883 Gene3D - 450 546 IPR035920 -
Cma14g01778 883 Gene3D - 241 340 IPR035920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01778 - - - bhj:120069423 1500.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00727 Cma-Chr10:3299632 Cma14g01778 Cma-Chr14:12873572 0 dispersed
Cma14g00627 Cma-Chr14:3103247 Cma14g01778 Cma-Chr14:12873572 1.14E-154 dispersed
Cma14g01778 Cma-Chr14:12873572 Cma15g00051 Cma-Chr15:273510 6.82E-134 dispersed
Cma14g02001 Cma-Chr14:14039978 Cma14g01778 Cma-Chr14:12873572 1.50E-09 dispersed
Cma14g01778 Cma-Chr14:12873572 Cma11g00271 Cma-Chr11:1371544 4.70E-178 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g611 . . . . . . . . . . . Cma14g01778 . Car14g01599 . . Cpe03g01487 . . . . . . . . . . . . . . . . . Cone4ag0294 Lsi05g01670 . . Cme06g00543 . . . . . . . . . . Cmo14g01815 . . . . . . . . . . . . . Cla05g00486 Cam05g0529 Cec05g0542 Cco05g0542 Clacu05g0528 Cmu05g0500 Cre05g0567 . Csa03g01261 Chy06g00516 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011586 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01778 Cma_Chr14 FPKM 4.921934 5.054707 9.512339 10.140847 33.93951 32.343994 33.952118 12.644134 13.523153 11.691314