Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01782 ATGGAGGAGACATTCTTCGATATTGTGGAGTTTCTCAAGAAGCCCTCAATTGCCGAAACATTCGTCGACATTTTGCTTTGTGCAGTTCCGATCTGGCTCGCTGTTATGATCGGCCTCGTCATCGGCTGGTCCTGGCGCCCTCGCTGGACTGGATTGGTTTTTCTGGGCTTTCGGAGCAAGTTTAGATTAATGTGGACTGCTCCTCCCGGATTTGGAGCTCGGCGGCTTTGGTTGGCCTTCACGGCTCTATCTGTCTTCTCAGTCTGCCGTACTCTTTGGTCTGATTTTAAGGGGAAGAGGAAAGTACCGCCGGTGCAGTCGGTCCCGGTTTCTACGGCGGCATCCACGTTGAAGCACTCGGCAGAAGGGAGCGGCGATGCAATTGTAAATAAAGAGGGAAAAGAGCAGGATATTGTTACAGAGAATGATTTGGATCACCTATTGCAACTTCTTGAAGGAAGGAATGGAGAGGCAGAGTGGCAAACTATGATGCAAAGGTCGACCCCAAACTTCGCATATGAAGCTTGGCGCCTTGAGCCTGAGATGTATATCAAGTTTCAACATCTTTATTTTTCCCCTCACCAGAACCGACCAACTGTTTATCGTAGTAGAACTGTCTTTGAGGATGCAACCCCGGAGATGGTTAGAGACTTTTTCTGGGACGATGAATTTCGTACTAAATGGGATCCCATGCTTGCATATTTCAAGATATTGGATGAATGCCCTCATACAGGGACCATGATTGTTCACTGGATTAAGAAGTTCCCCTTTTTCTGCAGCGATAGAGAATACGTTATGGGTCGAAGAATATGGGAGACTGCAAAGACTTACTATTGTGTTACAAAGGACGTACAACATCCAAGCTTACCCCGACTTGACAAACCCAGGCGTGTGGATCCTTATTTTTCAAGTTGGATCATCAGGGCAGTGGAATCTCGTAAAGGAGATGGATTACGGTCTGCTTGTGAGGTTATCCTAGTGCATTATGAAGATATGGGAATCCCCAAGGATGTGGCTAAGTTGGGAGTCCGTCATGGAATGTGGGGAACTGTCAAGAAGTTGCACTCTGGTTTCAGAGCATACCAGAACGCTAGGAAATCAGATATTTCTGTTTCTAGAAGTGCACTGATGGCTAGGATCACCACAAAGACTTCTTTGGACAGAAACACGGATTCCTCGGAGCCAGAATCTGATGAAGTACGAACTCAAGTGATGAGGAAAAAGCATCAAAATGATTCTGGCATAGATTGGAAGTGGATAATCATTGGTGGGACAGTGGCTGTAGTCTGTGGATTTCGAACTGGTGCAATTGGGAAGGCCTTGTTACTTGGGGCAGGACAGAGAATAGCTCGAAGGGCAGTCGAAGGCGTGCATAAAAGCAGGCGCAGGCATCAAATCAAGGTGGTCGTCGTCCTTGACAACTAA 1425 47.02 MEETFFDIVEFLKKPSIAETFVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGFRSKFRLMWTAPPGFGARRLWLAFTALSVFSVCRTLWSDFKGKRKVPPVQSVPVSTAASTLKHSAEGSGDAIVNKEGKEQDIVTENDLDHLLQLLEGRNGEAEWQTMMQRSTPNFAYEAWRLEPEMYIKFQHLYFSPHQNRPTVYRSRTVFEDATPEMVRDFFWDDEFRTKWDPMLAYFKILDECPHTGTMIVHWIKKFPFFCSDREYVMGRRIWETAKTYYCVTKDVQHPSLPRLDKPRRVDPYFSSWIIRAVESRKGDGLRSACEVILVHYEDMGIPKDVAKLGVRHGMWGTVKKLHSGFRAYQNARKSDISVSRSALMARITTKTSLDRNTDSSEPESDEVRTQVMRKKHQNDSGIDWKWIIIGGTVAVVCGFRTGAIGKALLLGAGQRIARRAVEGVHKSRRRHQIKVVVVLDN 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12897482 12902030 - CmaCh14G017820.1 Cma14g01782 308765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01782 474 MobiDBLite consensus disorder prediction 389 407 - -
Cma14g01782 474 Pfam START domain 197 328 IPR002913 GO:0008289
Cma14g01782 474 MobiDBLite consensus disorder prediction 383 407 - -
Cma14g01782 474 SUPERFAMILY Bet v1-like 144 362 - -
Cma14g01782 474 PANTHER OS07G0185200 PROTEIN 1 452 - -
Cma14g01782 474 CDD START_STARD2_7-like 139 361 - -
Cma14g01782 474 PANTHER PHOSPHATIDYLCHOLINE TRANSFER PROTEIN 1 452 - -
Cma14g01782 474 Gene3D - 136 364 IPR023393 -
Cma14g01782 474 ProSiteProfiles START domain profile. 174 363 IPR002913 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01782 - - - csv:101216617 812.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00788 Cma-Chr14:3985850 Cma14g01782 Cma-Chr14:12897482 2.38E-37 dispersed
Cma14g01782 Cma-Chr14:12897482 Cma16g00603 Cma-Chr16:3109923 2.04E-127 dispersed
Cma14g01782 Cma-Chr14:12897482 Cma02g00950 Cma-Chr2:5648207 1.10E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g619 . . . . . Bpe14g01229 . . . . . Cma14g01782 Car06g01159 Car14g01603 . Cpe08g00311 Cpe03g01491 . . . . . . . . . . . . . . . . . . Lsi05g01676 . . Cme06g00539 Blo02g00607 . . . . . Bma02g00806 . . Cmo06g01352 Cmo14g01818 . . . . . . . . . . . . . Cla05g00482 Cam05g0525 Cec05g0538 Cco05g0538 Clacu05g0524 Cmu05g0496 Cre05g0563 . Csa03g01257 Chy06g00512 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008740 0 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 2 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01782 Cma_Chr14 FPKM 10.377636 12.878568 19.194687 16.171106 25.888897 24.500591 24.009998 9.841908 9.596575 9.82771
Cma14g01782 Cma_Chr00 FPKM 21.466482 24.215179 20.851923 21.331213 9.747814 7.64927 8.188934 38.07608 37.458355 37.897667