Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01806 ATGCGGTTGTACAATTTTGTTGTGGTGCTGTACGCAGCGGATCAACCAGGTGGGACAGACAATGATACCCAACTAGATAAACAAACGCGGCGGCGAGTTGCGGTCGACGACGACGCTTTGATTCCAGATCAGATGGATCCATTAGAGGACTCGAGTTGTTGGGATTTTCTTGATTACTCCTTGTTCGTCGACGGCGACAATATCATTAACCCTTCACTCGATCCTTTGTGGCCTCCTAGTGATTCCAGGGATAGTTGCGCGCATACTGATGTTTCAGCCGGGCGTGTTGAATCTGAACAAAACGATCATTCGCGGAAGAGGGCTCGAGATGGGTCGTGCGCTGGACCAACTTCAAAAGCTTGTCGTGAGAGGTTGAGGAGAGAGAGATTAAATGATAGGTTTCTAGATTTAAGTATTGCTTTAGAACCTGGTAGGCCTTCCAAAAATAACAAGCCGGCCATTCTTGATGATGCCATTAGAGTGTTAAATCAACTCAAGACTGAAGCCGAAGAGCTCAAACAAACTAATGAAAAGTTGCAAGAAGAAGTCGAGTGCTTAAAGGCAGAGAAGAATGATCTTCGGAAAGAGAGAATGAATTTGAAGGAAGACAAAGAAAGAATCGAACGACAGTTGAAATCTATAGCCATCCCACCTCCAGGGCTTATCCCTGGTCATCCAGCTGCATATCATGCTGCTCCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTTTGTTCCCAATGTGGCAATATCTTCCTCCATCAGTACGCGATACATCTCAAGATCATGAGCTCAGGCCTCCTGCTGCCTAG 810 46.17 MRLYNFVVVLYAADQPGGTDNDTQLDKQTRRRVAVDDDALIPDQMDPLEDSSCWDFLDYSLFVDGDNIINPSLDPLWPPSDSRDSCAHTDVSAGRVESEQNDHSRKRARDGSCAGPTSKACRERLRRERLNDRFLDLSIALEPGRPSKNNKPAILDDAIRVLNQLKTEAEELKQTNEKLQEEVECLKAEKNDLRKERMNLKEDKERIERQLKSIAIPPPGLIPGHPAAYHAAPGKMAVFPGYGLFPMWQYLPPSVRDTSQDHELRPPAA 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12966023 12967912 - CmaCh14G018060.1 Cma14g01806 308789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01806 269 PANTHER TRANSCRIPTION FACTOR BHLH104 45 269 - -
Cma14g01806 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 185 IPR036638 GO:0046983
Cma14g01806 269 PANTHER BHLH TRANSCRIPTION FACTOR 45 269 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cma14g01806 269 SMART finulus 120 171 IPR011598 GO:0046983
Cma14g01806 269 Coils Coil 155 210 - -
Cma14g01806 269 Gene3D - 117 194 IPR036638 GO:0046983
Cma14g01806 269 MobiDBLite consensus disorder prediction 74 119 - -
Cma14g01806 269 MobiDBLite consensus disorder prediction 95 112 - -
Cma14g01806 269 Pfam Helix-loop-helix DNA-binding domain 118 165 IPR011598 GO:0046983
Cma14g01806 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 165 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01333 Cma14g01806 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01806 Cma-Chr14:12966023 Cma16g00846 Cma-Chr16:4970716 8.80E-53 dispersed
Cma14g01806 Cma-Chr14:12966023 Cma06g01333 Cma-Chr6:8764055 5.66E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36326 PF00010 HLH 2.30E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01806 - - csv:101210812 357.451