Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01817 ATGGAGCGCATTATAGGTGGGAAGTTTAAGCTTGGAAGGAAGATCGGCAGCGGATCATTTGGCGAACTTTATTTGGGTACAAATGTACAAACTGGAGAGGAAGTGGCTGTCAAACTGGAATCTGCAAAGACCAAGCACCCTCAGCTTCACTATGAGTCAAAACTATACATGCTTCTTCAAGGAGGAACCGGTGTACCTCATCTCAAATGGTTTGGAGTTGAGGGTGATTACAATGTCATGGTTATTGATCTCCTTGGGCCAAGCTTAGAAGACTTGTTCAACTACTGCAATCGGAAACTGTCCTTGAAGTCCGTTTTGATGCTAGCAGATCAGTTGTTAAACAGAGTTGAATATATGCATTCACGCGGTTTCCTTCATCGTGACATAAAGCCAGACAATTTTCTTATGGGCTTGGGGCGAAAGGCTAATCAGGTGTACATCATTGACTATGGTCTTGCAAAAAAGTACAGAGATCTTCAGACACACAAGCATATACCATACAGAGAAAATAAGAATCTCACTGGAACAGCTCGCTATGCAAGTGTCAATACTCATCTTGGAGTTGAGCAAAGCAGGAGGGATGATTTAGAATCGCTGGGCTACGTGCTTATGTATTTTCTCAGGGGAAGCCTTCCTTGGCAAGGACTGAAGGCAGGGACTAAAAAGCAAAAATATGATAAGATCAGTGAAAAGAAGATGCTTACTCCAGTAGAGGTCCTCTGCAAATCTTATCCATCAGAATTTACATCCTACTTCCACTATTGTCGGTCACTGAGGTTTGAAGATAAACCTGACTATTCGTATCTGAAGAGATTATTCCGAGACCTTTTCATCCGTGAAGGATATCAATTTGACTATGTATTTGACTGGACTATACTGAAATATCCACAAATTGGCTCCAGTTCGAAACCACGACCCAGTGGAAAACCAGGTCTCGCCCCAGGACCATCTGCTGAAAGAGGGGAAAAGCACCCAGTGGGCCAAGATATTCGAGATAGATTCTCTGGTGGAACTGAGGCATTCGGAAGAAGGAACGCCAGTGGGCATGGTTTGCATGGTGATCATTCCAGACACAGATCATCTGATGATGTACCATCTTCCAAGGATGTGCAACCTGATTCAGAAAGGGCCCGCAGTAGCTATAGGAATGGAAGCCTTTCGAAGAGGCCTGTTTTATCAAGCAGTCGACCAAGCTCCTCTGGGGAGCCAAGTGAAATCCGATCAAGTCGCCTGATGTCAGCAAGTAGTCGTCTATCTGCAGGCCAAAGGGTTCAACCTGGTTTTGAGACCAAAACGACTGCTCTTAACCGTTCTTCAACTACAAAAGGTGGCCGTGATGATACACTCCGGAGCTTTGAGCTGTTGTCTATTGGAACTGGCAAGAGGAAATGA 1392 44.68 MERIIGGKFKLGRKIGSGSFGELYLGTNVQTGEEVAVKLESAKTKHPQLHYESKLYMLLQGGTGVPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLSLKSVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPVEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSKPRPSGKPGLAPGPSAERGEKHPVGQDIRDRFSGGTEAFGRRNASGHGLHGDHSRHRSSDDVPSSKDVQPDSERARSSYRNGSLSKRPVLSSSRPSSSGEPSEIRSSRLMSASSRLSAGQRVQPGFETKTTALNRSSTTKGGRDDTLRSFELLSIGTGKRK 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13014810 13020456 + CmaCh14G018170.1 Cma14g01817 308800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01817 463 MobiDBLite consensus disorder prediction 377 442 - -
Cma14g01817 463 SMART serkin_6 9 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01817 463 MobiDBLite consensus disorder prediction 348 376 - -
Cma14g01817 463 PANTHER CASEIN KINASE-RELATED 1 450 - -
Cma14g01817 463 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Cma14g01817 463 MobiDBLite consensus disorder prediction 299 449 - -
Cma14g01817 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Cma14g01817 463 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
Cma14g01817 463 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 450 - -
Cma14g01817 463 Pfam Protein kinase domain 10 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01817 463 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01817 463 CDD STKc_CK1_delta_epsilon 8 282 - -
Cma14g01817 463 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01817 K08960 CSNK1E; casein kinase 1, epsilon [EC:2.7.11.1] - csv:101207063 855.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01078 Cma14g01817 CCT
Cma08g01078 Cma14g01817 ECH
Cma06g01316 Cma14g01817 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01297 Cma-Chr12:10028664 Cma14g01817 Cma-Chr14:13014810 0 dispersed
Cma14g01251 Cma-Chr14:9922057 Cma14g01817 Cma-Chr14:13014810 0 dispersed
Cma14g01817 Cma-Chr14:13014810 Cma19g00101 Cma-Chr19:611081 0 wgd
Cma14g01817 Cma-Chr14:13014810 Cma02g01735 Cma-Chr2:9743857 0 wgd
Cma14g01817 Cma-Chr14:13014810 Cma06g01316 Cma-Chr6:8695431 0 wgd
Cma14g01817 Cma-Chr14:13014810 Cma08g01078 Cma-Chr8:6719781 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g724 . . . . . Bpe14g01261 . . Cmo08g01053 . Cma06g01316 Cma14g01817 Car06g01133 Car14g01629 . Cpe08g00338 Cpe03g01520 Bhi01g00721 . . . . . . Cla06g00672 Cam06g0721 Cec06g0729 Cco06g0737 Clacu06g0712 Cmu06g0698 Cre06g1469 Cone14ag0152 Cone15ag0166 Cone7ag0330 Cone4ag0335 Lsi05g01738 Csa02g01054 Chy05g00315 Cme06g00483 Blo02g00750 Blo07g00269 Bda11g00636 Bda13g00058 . Bpe13g00553 Bma02g00775 Bma06g01604 . Cmo06g01326 Cmo14g01855 Cma08g01078 . Car08g00952 . . Cpe17g00199 Bhi12g01609 Tan06g2404 . . Hepe03g0291 . Lcy13g0383 Cla05g00439 . Cec05g0487 . Clacu05g0474 . . Lsi09g01228 Csa03g01201 Chy06g00465 Cme05g00576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000454 2 6 4 3 4 3 5 3 3 3 3 2 5 3 3 4 3 8 5 3 3 3 3 3 3 3 3 15 4 2 117
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69106 PF00069 Pkinase 2.60E-26 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01817 Cma_Chr14 FPKM 24.611662 28.733765 39.718445 39.18858 33.430305 32.013462 33.183228 27.18959 28.157648 27.042751