Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01822 ATGGGTACCTCTGTTAAGGGCCTCATGAAAGGAATTAAATACATTTCACAGATTTTCGATGAAAAAGAACAGGAAATGCAGATTGGGCTTCCCACTGATGTTAAGCATGTCGCTCACATTGGATGGGATGGTCCATCTGCTAATCAGAATAATACACCTACCTGGATGAACGAGTTCAAATCTTCGCCACAATCCCAAAACTCAGGCGATTTGGCTAATTCTACTGGGGAACTTGCTCTTTCTTCTGTCCGAGAATCTGGAGAGCTAGATGTGAAAAAGGAAGGTCGAGCTCCAAGGTCAAAACGCCAAACTTCAACAGACTCTTCCTCATCCTTAGACTCTTCTTCTGCTCGGCGGAACTCGGAGAAGAACTCCAGGCGACAGCGATCATCATGCCCCTCAGGTGACTCGGGACCCCAGGAAGGTAGTTCGTGCAAGGAAGGTAGTTCGCGACATGCACGACGTCGTCGTGGTTCAGCTCCCGGAAATGAAACAAGCACAGAAAATCCTGTCCCAAAACATTCTCATCGGAGGAAATCTAAGGGGTCATCGGACGGTGGTGAATCATCAAAATCAAGAAACAACGACTCTTTAACAGACATAACTCTACCAGTTTTGGAAGCAGTGGACGAAGAGAAGGGATGA 645 46.82 MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFKSSPQSQNSGDLANSTGELALSSVRESGELDVKKEGRAPRSKRQTSTDSSSSLDSSSARRNSEKNSRRQRSSCPSGDSGPQEGSSCKEGSSRHARRRRGSAPGNETSTENPVPKHSHRRKSKGSSDGGESSKSRNNDSLTDITLPVLEAVDEEKG 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13036299 13037831 + CmaCh14G018220.1 Cma14g01822 308805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01822 214 MobiDBLite consensus disorder prediction 86 101 - -
Cma14g01822 214 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 1 212 IPR044510 -
Cma14g01822 214 SMART PBD_5 28 62 IPR000095 -
Cma14g01822 214 CDD CRIB 26 62 - -
Cma14g01822 214 MobiDBLite consensus disorder prediction 40 214 - -
Cma14g01822 214 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC5-LIKE 1 212 - -
Cma14g01822 214 MobiDBLite consensus disorder prediction 187 201 - -
Cma14g01822 214 MobiDBLite consensus disorder prediction 44 81 - -
Cma14g01822 214 MobiDBLite consensus disorder prediction 127 146 - -
Cma14g01822 214 MobiDBLite consensus disorder prediction 102 118 - -
Cma14g01822 214 Pfam P21-Rho-binding domain 27 62 IPR000095 -
Cma14g01822 214 Gene3D CRIB domain 21 70 IPR036936 -
Cma14g01822 214 ProSiteProfiles CRIB domain profile. 28 41 IPR000095 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01822 - - - csv:101211802 291.582
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01313 Cma14g01822 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00300 Cma-Chr7:1330423 Cma14g01822 Cma-Chr14:13036299 3.09E-18 dispersed
Cma13g00724 Cma-Chr13:6442175 Cma14g01822 Cma-Chr14:13036299 1.01E-23 dispersed
Cma14g01822 Cma-Chr14:13036299 Cma18g00241 Cma-Chr18:1274201 1.11E-26 dispersed
Cma14g01822 Cma-Chr14:13036299 Cma19g00102 Cma-Chr19:618051 1.19E-24 wgd
Cma14g01822 Cma-Chr14:13036299 Cma02g01734 Cma-Chr2:9741921 7.01E-28 wgd
Cma14g01822 Cma-Chr14:13036299 Cma06g01313 Cma-Chr6:8678011 4.05E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g733 . . . . . . . . . . Cma06g01313 Cma14g01822 Car06g01127 Car14g01635 . Cpe08g00342 . Bhi01g00711 . . . Hepe05g1668 . . . . . . . . . . . . . Lsi05g01745 . . . . . . . . . . . . Cmo06g01321 Cmo14g01862 . . . . . . . . . . . . . . . . . . . . . Csa03g01195 Chy06g00459 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000834 1 5 1 3 2 3 5 2 3 3 3 2 5 3 3 4 1 2 5 3 3 3 3 3 3 3 2 5 3 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01822 Cma_Chr14 FPKM 0.0 0.0 0.0 0.27813 0.0 0.0 0.0 0.287659 0.257244 0.345874