Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01824 ATGTCGGCTCCATCCGCTCGCCTGCTTCGAGATCGCAGTGGCGGATCCGCTACCTTAGACGCCGCCATCAAGTCCTCCAAACCCCTGACACCGGTTTCTTGTTCCAATCGAAAGGCTACTTCCGATTCATCCTGCAGATTTTCGTCGGCGGGGAAAGAGAATCCGAGGTCCACGTTTAAGGTTCCTATGATGGCCCAAAAGCCATCGATCCGGGCCGTGCCGCTAGTGAACAAGGCTGCGGCGATTGCTGTTACCGATGCTGAAAGTCGTGCTCGGAGGTCCACGTCTTCGGTTCCGAGAGGTAGATGCTCTAGTCCTTCTGAGTTTATTAGGGTTTCCGTTGATTCTCGTATGAACCGGAGGGTTTCGGTTGATCGAGTGAGAGGATCTGTGGGCGGTGGAAGAGGTTCGCGTGGTAGAGGTTCTGAGAGTAATAAACAGATAGTAGGAGTTCAGGATCTGAATGTGATGGTGGGTGGAGGAGGGCCGACTGAATTAAGGGTTTATAGGGAGTTGAAGGGAAATGTAAAGCTTCGAGCGAGCATGGATAGTAAGCTTCGGATTTCTGAGCCTAAGCAACATGCTGATGATGAGAAAATTGAGGATAAACCACTGGAGATTAAGGTTTTAGGAAGCCATAGTGGGGAAGGTATTGACAAAACATTACGAAGCGATGAAAATGGTAGAAGTTCGATTATTTTCGAGAGCGGCTTCGCAGTTAATGAAGCACGAAAAGAAAATTTTTGTATCGTTGCCGAGTCGAGCATTGTAGATCGTCGTGGTGTTAACTCTAGTTTGGAGTCTGAGCAGAAAGATTTGGAGATTGTCAAAGAGTGTACGGGTAACAATTATCCAAGCAAGCTCCATGAAAAACTTGCTTTCTTGGAAGGTAAGGTAAAGAGGATAGCATCGGATATTAAGAAGACAAAGGAAATGTTGGATTTGAATGGTACTTGTTCATCTAAGCTGATACTTTCAGATATTCAGAAGAAGATTTCTGGGATTGAGAAAGCGATCGGGCATGGTGCAGTCAGTTCTGGTACAAACGAGAAAGATATCAAAATGGGTCTGAAGGATGAGGCCAATGAGGCAGATATTAGCACCAAGGAATTGGAGGAGAGACTATTTCCTCATCGTAGATTGCTCGGGAATGGGATGTCAATGAAATCAGCATCAGATAGCTCTAAGAGCAATGAAATCCATACAATTGAAGAGAACCCAGTTGCTCTGGAGTTTTTGGAGCAAACAAAAGTCACCATGAGGAGCGAACAAGTTCAAGAAATGGAAGGAAATACTTCTGCAGGATTGCAAGAATCATCAACCCAATTCATGGGTAAGCAAGAGGCTGAGTTCGTTCTCACAAACGATGAGATTCTTGATAATTTTGATGATCAAGAGAATAAACAGGGAGGTCTGATTGGCGAGGAGACAGATGATACTAGCATCTACCCGATGAATGAAATAGGAATTAGAACCTCAACAGGTGGATGGTTTATGTCGGAGGGAGAGGCTGTCCTTCTTGCTCATAACGATGGTTCATGCTCGTTTTACGATGTTACTAATACAGAGGAGAAATGTGTATACAAGCCACCAGAAGGAATCTCACCCAATATTTGGAGAGACTGTTGGATAATACGTGCCCCTGGAGCAGATGGTTGCGCTGGAAGATATGTGGTGGCAGCATCAGCTGGGAATACGATGGATGCAGGTTTTTGCTCATGGGATTTTTACAGCAAGAACTTACGAGCTTTCCAGATTGAGGGTGCAATGCCCTCTTCAAGGACGGCACTCGCCCCCTTACCCCATAACATTGTGCAAAAGCGTTATGCTCCAAGTTATATGCTGGTGCCTGAAACGGAACAGTGGTGGTACAAGCCGTGCGGACCTCTGATTGTTTCAACTGCTACCTGTCAAAAGATTGTAAAGGTTTTTGATGTCCGTGACAGTGACGAAATTATGAACTGGGAAGTGCAGAAGCCTGTGGCAGCAATGGATTATTCTAGTCCCTTGCAGTGGAGAAACAGAGGAAAAGTAGTTGTAGCAGAAACAGAAGCATTATCTCTATGGGATGTTGCTTCTACAAGTGCTCATGCATTGCTCTCTGTTTATTCATCTGGCCGCAAAATCTCTGCTCTTCACGTCAACAACATGGATGCTGAATTAGGGGGAGGAGTTCGACAAAGAATAAGTTCAGCAGAAGCAGAAGGAAACGATGGTGTATTCTGCACAACAGATTCTGTAAATATTCTGGACTTCCGCAGCCCATCAGGAATAGGCCTAAAGTTGCCTAAACCCAGCCTTGGCGCACAGTCTGTTTTCTCTCGAGGAGATTCTGTGTATGTTGGTTGCTCCAGTGGCAGGTCAGGAGGGAGGAAGCCGCAACCCTCTTCAGTGGTACATCAATTTTCTATTAGAAAACAGGGCCTCTTCTGCACTTATGCATTACCAGAAAGCAATGCACACGCCCATCATACAGCAGTAACTCAAGTTTGGGGGAATTCTAATCTTGTCATGGCTGTCTCTGGATTGGGGCTGTTTGTATTTGATGCCTTAAACGATGAAGCCTCACAACCCTCCTCAGTTCATACTGAAAGCACCCAAGTGTTCAGGGAAGTCGTTGGTTCAGATGATTTGTATTCACCTTCGTTCGATTATTCGACATCGACATCTCGTACGCTTCTCATATCAAGGGATCGCCCTGCAGCATGGAAACAATTGTCATAG 2724 45.67 MSAPSARLLRDRSGGSATLDAAIKSSKPLTPVSCSNRKATSDSSCRFSSAGKENPRSTFKVPMMAQKPSIRAVPLVNKAAAIAVTDAESRARRSTSSVPRGRCSSPSEFIRVSVDSRMNRRVSVDRVRGSVGGGRGSRGRGSESNKQIVGVQDLNVMVGGGGPTELRVYRELKGNVKLRASMDSKLRISEPKQHADDEKIEDKPLEIKVLGSHSGEGIDKTLRSDENGRSSIIFESGFAVNEARKENFCIVAESSIVDRRGVNSSLESEQKDLEIVKECTGNNYPSKLHEKLAFLEGKVKRIASDIKKTKEMLDLNGTCSSKLILSDIQKKISGIEKAIGHGAVSSGTNEKDIKMGLKDEANEADISTKELEERLFPHRRLLGNGMSMKSASDSSKSNEIHTIEENPVALEFLEQTKVTMRSEQVQEMEGNTSAGLQESSTQFMGKQEAEFVLTNDEILDNFDDQENKQGGLIGEETDDTSIYPMNEIGIRTSTGGWFMSEGEAVLLAHNDGSCSFYDVTNTEEKCVYKPPEGISPNIWRDCWIIRAPGADGCAGRYVVAASAGNTMDAGFCSWDFYSKNLRAFQIEGAMPSSRTALAPLPHNIVQKRYAPSYMLVPETEQWWYKPCGPLIVSTATCQKIVKVFDVRDSDEIMNWEVQKPVAAMDYSSPLQWRNRGKVVVAETEALSLWDVASTSAHALLSVYSSGRKISALHVNNMDAELGGGVRQRISSAEAEGNDGVFCTTDSVNILDFRSPSGIGLKLPKPSLGAQSVFSRGDSVYVGCSSGRSGGRKPQPSSVVHQFSIRKQGLFCTYALPESNAHAHHTAVTQVWGNSNLVMAVSGLGLFVFDALNDEASQPSSVHTESTQVFREVVGSDDLYSPSFDYSTSTSRTLLISRDRPAAWKQLS 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13039174 13043387 + CmaCh14G018240.1 Cma14g01824 308807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01824 907 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 906 IPR045289 -
Cma14g01824 907 Gene3D - 497 877 IPR015943 GO:0005515
Cma14g01824 907 Coils Coil 354 374 - -
Cma14g01824 907 MobiDBLite consensus disorder prediction 28 55 - -
Cma14g01824 907 MobiDBLite consensus disorder prediction 1 58 - -
Cma14g01824 907 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 501 789 IPR011047 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01824 - - - csv:101211564 1359.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01311 Cma14g01824 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01824 Cma-Chr14:13039174 Cma06g01311 Cma-Chr6:8668790 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g739 . . . . . Bpe14g01267 . . . . Cma06g01311 Cma14g01824 Car06g01125 Car14g01636 . Cpe08g00344 Cpe03g01527 Bhi01g00709 . . . Hepe05g1670 . . . . . . . . . . . Cone7ag0335 Cone4ag0342 Lsi05g01747 . . Cme06g00475 Blo02g00757 Blo07g00273 Bda11g00641 Bda13g00051 . Bpe13g00547 . Bma06g01607 . Cmo06g01319 Cmo14g01865 . . . . . . . . . . . . . Cla05g00431 Cam05g0469 Cec05g0478 Cco05g0478 Clacu05g0466 Cmu05g0445 Cre05g0506 . Csa03g01193 Chy06g00457 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006299 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01824 Cma_Chr14 FPKM 5.202837 5.268435 0.902342 0.956875 14.36853 13.946927 13.374855 0.306169 0.319116 0.231071