Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01828 ATGAGAGCAAAGGCCTGGATTAACCAACAAATTTTTGGCTTCAAGAGTAAATTCAGGAAGATGATAAATTGTATTCGTTCAGGGGATCAGTTAAGAGTAGATGAAATGATTCACTCATCAGATTCTCTGGCAACTCGAGATTATTCAGCTAGTGGCTTTTCATCCCGAACGGGTGAGGTGGAACCAAAGGTGGATAATGTCAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGCTATCTGAATTATGAGGAAGCACGAGCTTTACTAGGAAGGCTGGAGTATCAAAAGGGAAACATAGAAGCTGCTCTTCAAGTTTTTGAAGGAATAGATATTGATGCTGTAATTTCCAGGATAAAATCTTCCATTTCGACGAGATATGAACAAAATAGACGCCAGTCACAATGTGATGCTGTGCCTAATATGTCGATGCATGCCATTAGTTTGCTTCTTGAAGCTATTTTTCTGAAAGCAAAGTCATTACAAGGTTTAGGAAGGTTTGTAGAGGCGGCCAAATCATGCAAACTAATTCTGGACACTGTGGAATCTGCTTTACCAGAAGGCTTACCTGAAAACTTTGCTATTGATTGTAAATTGCAAGAGACACTAACGAAGGCTGTTGAATTACTTCCAGAATTGTGGAAATCTGCCGGGTCTCCAGAAGAATCAATCTTGTCATATAGGCGTGCCCTTCTCTATCAATGGAATCTGGAAATGGAAACCAGAGCAAAAATAGAAAAAGAGTGCGCAATATTCCTTCTCTATAGTGGTTGTGATGCAAGTCCTCCCAATCTCCGTTCACAGATGGAAAGCTCATTCGTGCCAAGAAGTAATATGGAAGAGGCCATTCTTCTTTTAATGGTTCTGATGAGAAAATATATACTTGGATTGATTGTATGGGACCCCTCAATAATAGAGCATCTCTCGTTTGCTCTGTCTATTTCAGGGGAACTTGGTACTTTAGCTAATGAGGTTGAACAATTGCCTCCAGGAATTATAAGCAGAAAAGAAAAATACTGCACCTTAGCTCTTTGTTACTATGGGGAAGGTAAAAGCTTAGTTGCGTTGAATCTTTTGAAGAACTTCTTGAGTAACATAGAGAATGTAGACTGTCTACTGGAATTGTTGCTGGCTTCAAAGCTCTGTGGGGAAATGTTGGTCTGTCTTGATGAGGGGGTGACATACACATTGAGAGTGCTTTCGGAGCTGCGTGGTAAATGCATTCAGATGGCTTCGGTGGCTAATTGTTTACTTGGCGTGCTGTTGTCGGTTATGTCCAAATTAGTTGCTTCCGATTCTCAGAAAGCTCTGAAACAGTCTGAAGCGCTCAAGGCACTACAAACTGCTGAGCAGCTGATGAGACAAAGAGATCCATTCATTGTTTATCATCTTTGTCTTGAATATGCTGAACAAAGGAAGCTGGATATGGCTCTATACTATGCAAAACAGTTAGTGAACCTCGAGGTTGGCTCTAGTCTGAAGTCTTATTTACTCTTGGCCAGAATATTGTCCGCCCAGCAACGATTTGTTGATGCAGAGACTGTACTCAATGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGGGAACTTTTACGAACTAAAGCTAAGCTCCAGATAGCACAGGGCCAGTTAAAGAATGGCATAGAAACATATACTCAACTTCTTGCTATAATTCAAGTCCAGACCAAAAGTAGTGGCGTTGGAAAGATGCTTTCAAAGGATGTGAGAAAATCTGAGAGAAGTCTGGAAATTGATACATGGCATGACTTGGCCAATATCTACACAAGCTTGTCTCAGTGGCGGGATGCTGAGATATGTCTATCAAAATTGCAGAAAATCAATCCGTATTCTGCTTCCAAATGGCATTCCACAGGTTTACTCTATGAATCCAAGGGTCTTCCAAGAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCCGGCCATGTTCCCAGCTTGATATCCACTGCCTGTCTTCTCCAACAGCTAGGTGGGAGTCAGTCATTTCCTGTGGTAAGAAGCTTGCTAACCGACGCCCTTCGACTTGATCGAGCAAACCCTTCTGCTTGGTACAGTCTCGGGCTGCTATATAAAGCTGATGTCAGGGCATCTGCACTGGAGGTTGCGGAATGCTTTGAGGCTGCATCTCTGCTTGAAGAGTCAGCACCGGTTGAACCTTTCAGATGA 2199 42.43 MRAKAWINQQIFGFKSKFRKMINCIRSGDQLRVDEMIHSSDSLATRDYSASGFSSRTGEVEPKVDNVNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALQVFEGIDIDAVISRIKSSISTRYEQNRRQSQCDAVPNMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLILDTVESALPEGLPENFAIDCKLQETLTKAVELLPELWKSAGSPEESILSYRRALLYQWNLEMETRAKIEKECAIFLLYSGCDASPPNLRSQMESSFVPRSNMEEAILLLMVLMRKYILGLIVWDPSIIEHLSFALSISGELGTLANEVEQLPPGIISRKEKYCTLALCYYGEGKSLVALNLLKNFLSNIENVDCLLELLLASKLCGEMLVCLDEGVTYTLRVLSELRGKCIQMASVANCLLGVLLSVMSKLVASDSQKALKQSEALKALQTAEQLMRQRDPFIVYHLCLEYAEQRKLDMALYYAKQLVNLEVGSSLKSYLLLARILSAQQRFVDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKNGIETYTQLLAIIQVQTKSSGVGKMLSKDVRKSERSLEIDTWHDLANIYTSLSQWRDAEICLSKLQKINPYSASKWHSTGLLYESKGLPRDALQAYNKALDIDPGHVPSLISTACLLQQLGGSQSFPVVRSLLTDALRLDRANPSAWYSLGLLYKADVRASALEVAECFEAASLLEESAPVEPFR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13064593 13068829 + CmaCh14G018280.1 Cma14g01828 308811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01828 732 PANTHER OS10G0471400 PROTEIN 13 732 - -
Cma14g01828 732 ProSiteProfiles Leucine-rich repeat profile. 353 374 IPR001611 GO:0005515
Cma14g01828 732 PANTHER PROTEIN NPG1 13 732 IPR043376 -
Cma14g01828 732 Gene3D Tetratricopeptide repeat domain 306 565 IPR011990 GO:0005515
Cma14g01828 732 Gene3D Tetratricopeptide repeat domain 566 726 IPR011990 GO:0005515
Cma14g01828 732 SUPERFAMILY TPR-like 439 559 IPR011990 GO:0005515
Cma14g01828 732 Pfam Tetratricopeptide repeat 627 652 IPR019734 GO:0005515
Cma14g01828 732 SMART tpr_5 152 185 IPR019734 GO:0005515
Cma14g01828 732 SMART tpr_5 586 619 IPR019734 GO:0005515
Cma14g01828 732 SMART tpr_5 620 653 IPR019734 GO:0005515
Cma14g01828 732 SMART tpr_5 494 527 IPR019734 GO:0005515
Cma14g01828 732 SMART tpr_5 530 563 IPR019734 GO:0005515
Cma14g01828 732 SUPERFAMILY TPR-like 531 702 IPR011990 GO:0005515
Cma14g01828 732 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01307 Cma14g01828 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00137 Cma-Chr5:598929 Cma14g01828 Cma-Chr14:13064593 0 transposed
Cma14g01828 Cma-Chr14:13064593 Cma19g00105 Cma-Chr19:634173 0 wgd
Cma14g01828 Cma-Chr14:13064593 Cma02g01732 Cma-Chr2:9733140 0 wgd
Cma14g01828 Cma-Chr14:13064593 Cma06g01307 Cma-Chr6:8641597 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01828 K21843 - csv:101206105 1276.54