Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01829 ATGATGCTGGATTTGCCTAAGGCTTTGAAGTTTCATTTCTGTGCTTTCTATAATTTGCTACAACATATCCTTCATGAAGAGTGCAAAAGCCCTCTCCCCCGAAACAAAACCAGAGGCTTCTCAACTTACAGAGAACTCCGCTCAGAAACAATGGCAGTTTCCGCAGTCTTAGGCTTTACGCCGGTCAGTTCTTCCGGTGTAATGGCAGCGTCGTCATCGAAACTTCACTTCAGAACTAAACCCAATCCCGAGCTAGGGTTTCTCTCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCCCTTCACCCATTTCTGCTCCTCTCAGACCTGCGCTTCAACCTGTTGCACGTAGAGTTTGCCCCTTTACTGGGAAGAAAGCAAACAAGAAGAACTTGGTTTCTTTCTCGAACCACAAGACCAAGAAATTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCCGGGAAGCGTTTTGTCAAACTACGCCTGTCAACAAAGGCTTTAAAGACCATTGAGAAGAATGGACTTGATGCTGTTGCTAAGAAAGCAGGAATTGATCTTCGTAAGGAATGA 597 45.06 MMLDLPKALKFHFCAFYNLLQHILHEECKSPLPRNKTRGFSTYRELRSETMAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13069123 13070926 - CmaCh14G018290.1 Cma14g01829 308812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01829 198 Gene3D Ribosomal protein L28/L24 122 198 IPR037147 GO:0003735
Cma14g01829 198 TIGRFAM L28: ribosomal protein bL28 123 178 IPR001383 GO:0003735|GO:0005840|GO:0006412
Cma14g01829 198 PANTHER 50S RIBOSOMAL PROTEIN L28, CHLOROPLASTIC 70 198 - -
Cma14g01829 198 PANTHER 39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL 70 198 IPR026569 GO:0003735
Cma14g01829 198 SUPERFAMILY L28p-like 123 195 IPR034704 -
Cma14g01829 198 Pfam Ribosomal L28 family 123 181 IPR026569 GO:0003735
Cma14g01829 198 Hamap 50S ribosomal protein L28 [rpmB]. 120 196 IPR001383 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01829 K02902 RP-L28, MRPL28, rpmB; large subunit ribosomal protein L28 - csv:101205872 249.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g749 . . . . . Bpe14g01271 . . . . . Cma14g01829 . Car14g01641 . . Cpe03g01532 Bhi01g00705 . . . . . . . . . . . . . Cone14ag0166 Cone15ag0176 . . . . . Cme06g00470 . . . Bda13g00047 . . Bma02g00759 . . . Cmo14g01870 . . . . . . . . . . . . . Cla05g00426 Cam05g0463 Cec05g0471 Cco05g0472 Clacu05g0460 Cmu05g0439 Cre05g0500 . Csa03g01188 Chy06g00452 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013731 1 2 0 1 1 0 1 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 0 1 2 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01829 Cma_Chr14 FPKM 7.296487 9.471246 25.026697 29.169613 159.646698 129.117142 144.979324 22.38542 22.319979 23.288456