Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01836 ATGGCTCTTCCCTTCTCCTATCTATCCAATCCCGACCGTCCGATTCCACGCCATTATTCGACATCACTGTTCACCAATCACACCCAAGTAAACGCCTTCCCCTCTGTTTCAGTTAATTGCTTTTTTTCGCGATCTGGACAACTCACCCTTTCATCGGAAGACGGGTTTTTTGTTGGGGTTGCTGGGCTCATAAATTTTGAACCCGTGAGCGTTGACCCAGTTGCGGAATCTGAGTTTCGAGTCGCTGAATTGTGTTCTTATTATATTGGGGGTTTTACAAAAAGGCAAATTTCCGATTGGATTTATACTGCGAGTTTCGAGGCTATGGGCGGCGATTCTAGGGCTGTTAATGGCTACGATGAGAGGTCTGTAGACTCTGCGGCGGCGGGAGAAGTTGGCGATCATAGAAACAGCGAAGATGACAGTGAATCGAATGCTCTATTGCCGCCGCGGCGCGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGAATGATAGCAATGGTAATAACCTAGCGGAGATTTTGGAGTTCCAACCGAGCGACGTGAGCGACTCCGGGGACGAGGAGTCTGATTCTTGCAGCTGTATGATTATGTAG 612 48.86 MALPFSYLSNPDRPIPRHYSTSLFTNHTQVNAFPSVSVNCFFSRSGQLTLSSEDGFFVGVAGLINFEPVSVDPVAESEFRVAELCSYYIGGFTKRQISDWIYTASFEAMGGDSRAVNGYDERSVDSAAAGEVGDHRNSEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13106273 13107973 - CmaCh14G018360.1 Cma14g01836 308819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01836 203 MobiDBLite consensus disorder prediction 127 146 - -
Cma14g01836 203 PANTHER OS03G0138400 PROTEIN 117 203 - -
Cma14g01836 203 MobiDBLite consensus disorder prediction 166 181 - -
Cma14g01836 203 MobiDBLite consensus disorder prediction 126 203 - -
Cma14g01836 203 PANTHER LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTIC 117 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01836 - - - csv:101205158 153.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g767 . . . . . . . . . . . Cma14g01836 . Car14g01644 . . Cpe03g01537 Bhi01g00111 . . . . . . . . . . . . . . . . . Lsi05g01761 . . . . . Bda11g00645 . . Bpe13g00541 . . . . . . . . . . . . . . . . . . Cla05g00418 Cam05g0456 Cec05g0463 Cco05g0465 Clacu05g0453 Cmu05g0431 Cre05g0492 . . Chy06g00442 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003341 2 1 2 2 1 1 2 1 1 1 1 1 1 0 1 2 1 2 2 1 1 2 2 1 2 1 2 3 4 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01836 Cma_Chr14 FPKM 7.277778 9.450386 7.093029 7.451613 5.732533 5.342913 6.134728 8.435689 7.855587 9.906466
Cma14g01836 Cma_Chr00 FPKM 3.32024 3.631182 2.151721 1.961183 0.78529 0.545824 0.82247 0.981544 1.351854 2.022836