Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01841 ATGAACTGCTCCATTTCCGGTGAGATTCCGGAAGAGCCAGTTGTCTCCAAGAATTCTGGACTACTCTTCGAGAAGCGTTTAATTGAGAGGCACATTTCTGACTATGGGAAATGCCCTGTTACTGGTGAACCGCTTTCCATCGATGACATGGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTAGTGCTGTCCAATTTTGCGCTAGAGCAACAGCTGCATACAGCTAGACAGGAGCTTAGTCACGCCTTGTATCAGCATGATGCTGCATGTCGTGTGATTGCAAGACTTAAGAAGGAACGCGATGAGGCTAGGTCATTACTTGCTCAGGCCGAGAGGCAGATGCCGTTGTCATCAACTCCAGTTTCATCTAATGCTGCTGTCAGTGGTAATGGGAAAAGAGTTAATGAGGATGAAGAATTGGGTCCTGATGGCAAGAAGATACGTCAAGGAATATCTGCCACTTTTATCTCTGAGCTCACAGATTGTAATGCTGCTCTATCACAGCAAAGGAAGAAGCGGCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTCTAGAAAGTTACACCCAGATTTCTAGCCATCCACTTCATAAAACAAGCAAACCAGGCATTATATCCCTTGACATCCATCATGAGAAGGATGTCATTGCGACTGGAGGGCTGGACACAAATGCTGTTATTTTTGACAGATCATCTGGGGAGATTTTATCTACACTAAGTGGCCATTCAAAGAAGGTAACAAGTGCCAAATTTGTGGCCCGAGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTTCGTGTGTGGCAACAATCTGATGATGGGAACTACAATTGTAGGCACATTTTAAAGGATCATACAGCTGAGGTCCAAGCAGTTACCGTCCATGCTACCAATAACTTCTTTGTCACTGCCTCCCTTGATAACACATGGTGTTTTTATGAGCTTGCTTCAGGATTATGCCTGACCCAGGTTACAGAGGCTTCAGAAACGGAGGGCTACACATCTGCAGCCTTTCATCCTGATGGTCTCATCCTTGGAACAGGCACGTCAGAGGCTCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCCAGATTTGATGGACACGTTGGGCCAGTAACTGCAATATCTTTTTCTGAAAATGGTTACTTCCTAGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGATCTTCGAAAATTGAAGAACTTTCGTACATTTTCACCTTATGATTCAGAAACTCCAACAAACTCTGTGGAATTTGATCATAGTGGATCTTACCTTGCGATTGCTGGCTCAGATTTAAGGGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGTATCAAAACTATTCCAGATTTGTCTGGCACAGGTAAAGCAACTTGTCTCAAATTTGGTCCAGATGCAAAATACTTGGCAGTTGGGTCCATGGATCGTAATCTTCGAATTTTCGGTGTGCCTGGGGAAGATGGCTCGATGGAAGCATAA 1566 44.06 MNCSISGEIPEEPVVSKNSGLLFEKRLIERHISDYGKCPVTGEPLSIDDMVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTPVSSNAAVSGNGKRVNEDEELGPDGKKIRQGISATFISELTDCNAALSQQRKKRQIPPTLVPVEALESYTQISSHPLHKTSKPGIISLDIHHEKDVIATGGLDTNAVIFDRSSGEILSTLSGHSKKVTSAKFVARDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYELASGLCLTQVTEASETEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGPVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFSPYDSETPTNSVEFDHSGSYLAIAGSDLRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGPDAKYLAVGSMDRNLRIFGVPGEDGSMEA 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13124755 13131988 + CmaCh14G018410.1 Cma14g01841 308824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01841 521 SMART WD40_4 383 421 IPR001680 GO:0005515
Cma14g01841 521 SMART WD40_4 339 380 IPR001680 GO:0005515
Cma14g01841 521 SMART WD40_4 252 291 IPR001680 GO:0005515
Cma14g01841 521 SMART WD40_4 424 463 IPR001680 GO:0005515
Cma14g01841 521 SMART WD40_4 470 511 IPR001680 GO:0005515
Cma14g01841 521 SMART WD40_4 207 249 IPR001680 GO:0005515
Cma14g01841 521 SMART WD40_4 297 336 IPR001680 GO:0005515
Cma14g01841 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 291 IPR001680 GO:0005515
Cma14g01841 521 Pfam Prp19/Pso4-like 64 129 IPR013915 -
Cma14g01841 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Cma14g01841 521 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Cma14g01841 521 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 520 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Cma14g01841 521 Pfam WD domain, G-beta repeat 385 421 IPR001680 GO:0005515
Cma14g01841 521 Pfam WD domain, G-beta repeat 473 510 IPR001680 GO:0005515
Cma14g01841 521 Pfam WD domain, G-beta repeat 254 290 IPR001680 GO:0005515
Cma14g01841 521 MobiDBLite consensus disorder prediction 133 150 - -
Cma14g01841 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 430 IPR001680 GO:0005515
Cma14g01841 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
Cma14g01841 521 MobiDBLite consensus disorder prediction 133 165 - -
Cma14g01841 521 CDD WD40 223 510 - -
Cma14g01841 521 Gene3D - 199 512 IPR015943 GO:0005515
Cma14g01841 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 423 - -
Cma14g01841 521 SUPERFAMILY WD40 repeat-like 220 510 IPR036322 GO:0005515
Cma14g01841 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 389 IPR001680 GO:0005515
Cma14g01841 521 CDD RING-Ubox_PRP19 3 54 - -
Cma14g01841 521 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Cma14g01841 521 Coils Coil 113 133 - -
Cma14g01841 521 SUPERFAMILY RING/U-box 1 53 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01297 Cma14g01841 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01841 Cma-Chr14:13124755 Cma05g00939 Cma-Chr5:7582072 4.64E-24 dispersed
Cma14g01841 Cma-Chr14:13124755 Cma06g01297 Cma-Chr6:8601238 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01841 K10599 - csv:101204424 979.548