Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01845 ATGTCACTTAGTTATACCGGGATTGAGATCAAGACAGCACATTCACTAGAATCATGGAATGGTGGTGTTCTTGTGATGGTTTCTGGTTCTGTTCAAATGAAGAATTTCAATCGAGTGAGAAAATTTGTGCAAACTTTTTTTCTTGCACCCCAGGAGAAAGGCTATTTTGTTTTGAATGATATCTTTCACTTTGTTGATGAGGAGCCAGTGCACCATTATCCAGCAGTCTTATTAAGTCAGACCAATCTGGATCCCACCTTAAATGTTCCTGCCGCAGTTCCAGAGACAGTGCCCAATTACTCACTCAATGGACCAGTCCAGGTGCGGGAGTTTACAGCCCCTGTTGTCAAAGAAAATGGTCACATGGATAGCCATAAGTTTGTAGAGCAGCAACTGCAGCAAGTTCCCGAGCCGAAAAACATTATTGAGGAAAATACAACAGAAGTAAATTCTATGCATCAGAACACCTCAACTGTTTTGCAAGATCATTTGCCTGTTTCTGTTGAAGAACATGCTGAGGAGCCCCAAAAGCACACATATGCTTCAATTCTAAGAGTTTCTAAAGGACAAGACGCCCCCGCTCCCACCATTGCACCTCCGTATCCTGTTAGTAAGGGCACACAACCTGCTTCGGAGCAAAACTACACTCCACCTCCCACCAGTCAGCAACTGAGTTCAGCTCCCCAAAATAATTCTGAAAGGGAACAGACAGGAGGAGGGGAGTTCCCTTCTACTGATGATGAAGGTGAAATAAAGTCTGTTTATGTAAGAAACCTGCCATCTACTGTGTCTGCTTCAGAAGTTGAGGAGGAATTCAAGCATTTTGGCAAACTCAGTTCTGATGGTGTGGTTATTAGGAGTCGCAAGGATGTTGGTTACTGCTATGCCTTCGTCGAATTTGAAGACATGACTGGGGTCCAAAATGCAATCAAGGCGGGTACGGCCCAGGTTGCTGGGCGTCAAGTATACATCGAGGAGCGGAGAGCGAACAGCAACATCCCATACCGAGGAGGAAGAAGGGGTAGAGGAAGAGGGAGCTACCACACCGAGTCTTCTAGAGGGCATTATAGCTCTCGGAGTTACAGTATGGGAGTTCGAGATGGAAGCGAGCGTGAGTACATCAGACCAAGGGGCAATGGCTTTTATCGACCGACTACTCGACAGCAGAAAGAGAACCTAAGCCATCAAGTATCAAGAAACGGAGAAAGTCCATCGGAGTCATCATAG 1227 45.8 MSLSYTGIEIKTAHSLESWNGGVLVMVSGSVQMKNFNRVRKFVQTFFLAPQEKGYFVLNDIFHFVDEEPVHHYPAVLLSQTNLDPTLNVPAAVPETVPNYSLNGPVQVREFTAPVVKENGHMDSHKFVEQQLQQVPEPKNIIEENTTEVNSMHQNTSTVLQDHLPVSVEEHAEEPQKHTYASILRVSKGQDAPAPTIAPPYPVSKGTQPASEQNYTPPPTSQQLSSAPQNNSEREQTGGGEFPSTDDEGEIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRSRKDVGYCYAFVEFEDMTGVQNAIKAGTAQVAGRQVYIEERRANSNIPYRGGRRGRGRGSYHTESSRGHYSSRSYSMGVRDGSEREYIRPRGNGFYRPTTRQQKENLSHQVSRNGESPSESS 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13143826 13146438 + CmaCh14G018450.1 Cma14g01845 308828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01845 408 MobiDBLite consensus disorder prediction 382 408 - -
Cma14g01845 408 MobiDBLite consensus disorder prediction 333 408 - -
Cma14g01845 408 MobiDBLite consensus disorder prediction 350 364 - -
Cma14g01845 408 CDD RRM_SF 254 325 - -
Cma14g01845 408 PANTHER OS02G0131700 PROTEIN 1 392 - -
Cma14g01845 408 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 392 IPR039539 -
Cma14g01845 408 MobiDBLite consensus disorder prediction 206 239 - -
Cma14g01845 408 CDD NTF2 1 66 IPR018222 -
Cma14g01845 408 MobiDBLite consensus disorder prediction 188 249 - -
Cma14g01845 408 SUPERFAMILY RNA-binding domain, RBD 247 357 IPR035979 GO:0003676
Cma14g01845 408 ProSiteProfiles Nuclear transport factor 2 domain profile. 1 64 IPR018222 -
Cma14g01845 408 Gene3D - 202 347 IPR012677 -
Cma14g01845 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 321 IPR000504 GO:0003723
Cma14g01845 408 SUPERFAMILY NTF2-like 5 66 IPR032710 -
Cma14g01845 408 Pfam Nuclear transport factor 2 (NTF2) domain 9 64 IPR002075 -
Cma14g01845 408 Gene3D - 1 69 - -
Cma14g01845 408 SMART rrm1_1 253 325 IPR000504 GO:0003723
Cma14g01845 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 329 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01845 - - - cpep:111790085 736.102
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01289 Cma14g01845 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00042 Cma-Chr8:217669 Cma14g01845 Cma-Chr14:13143826 2.53E-100 dispersed
Cma14g01845 Cma-Chr14:13143826 Cma17g01373 Cma-Chr17:9167959 5.82E-94 dispersed
Cma14g01845 Cma-Chr14:13143826 Cma06g01289 Cma-Chr6:8572392 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g785 . . . . . Bpe14g01284 . . . . Cma06g01289 Cma14g01845 Car06g01107 Car14g01653 . Cpe08g00362 Cpe03g01545 . . . . . . . . . . . . . . . . Cone7ag0352 Cone4ag0365 Lsi05g01775 . . . Blo02g00687 . . Bda13g00036 . . . . . Cmo06g01295 Cmo14g01889 . . . . . . . . . . . . . Cla05g00405 Cam05g0442 Cec05g0449 Cco05g0450 Clacu05g0439 Cmu05g0417 Cre05g0479 . Csa03g01165 Chy06g00427 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007215 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01845 Cma_Chr14 FPKM 15.818457 16.355434 14.774776 16.163979 42.220181 49.478554 42.966522 19.953121 18.625179 18.118572