Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01847 ATGGAGAATTCCAATGGCAGGTACAGCTACAGACTACAGAGAGAAACAGAGAGACAGAGAGAGAGAGAGATCCGTGAAGGAGACATGAATCGTGTTGAGATTCAGCTCAAAAGGGGAATTCTTGTCGACAACAATGGAGAGCCATGCAGCGGCATTGGCTCTTCCGGTGCCTCCAACGATGAGAATTCCGTTTCCAAGGCGAAGGAGGTGGATAAGCACCAACCGGATTTGTCATCGGAGGAGTTTTCATCCCCTGTTGAGGCTGAGCCCGAATTAGGGTTGGGGCTCAGCCTCGGAAGTGGGATTTCTACCGGAAAGGGTAAGCATGGTGGATGGGGCGAGCGTGGCAGGATATTGACGGCCAAAGATTTTCCCTCGGCGATCTCTCCTGGTGGATCGTCTTCTTCTTCTTCTTTTGCTAGATTCTCAGGCAGAGCTGCTGCTGTTTCTGGTGTTAAGAGGGCGGCGGAACCTGTTGCTCACCATGGCGATTCTCCGCCTCCGGCTGTCAGTCAGGTGGTGGGGTGGCCGCCATTAAGAACTTACAGAATCAACAGCCTGGTTAACCAAGCTAAGAATCGAAAGTCTGGAGATGAAAAGGAGCTGCTTAGGTCCAATGGTGTTGCAGAGAAGATCCATGATGACAAAAATATGAGTGCCACTGATACTGAAAAGGGGCCTCTAGGCTTTGTGAAGGTGTATATGGACGGAGTTCTAATAGGCAGGAAAGTGGATTTGAATGCCCATTCTTGCTATGGGACTTTGGCCCTGATGCTCGAGGACATGTTTTTTAAGCCCACAGGAAGTGCCCCATCCTCTGGCTCGAGTGGAGATTATGACGAAAAAGCACCAAAACCTTCAAAACTTCTCACTGGCTCCTCTGAGTTTGTGCTCACCTACGAAGATAAAGAAGGAGACTGGCTGTTGGTTGGAGATGTTCCTTGGAAGATGTTCCTCGACTCGGTTAAGAAACTTCGGATCATGAGGACATCTGAGGCAAAGGGAATCGGGAAAGCTGGTATTCGCTGCATTGGTCGACTGTCTTTTACGAGTGCATTTCTTATGTTTGTGAATCGAGTCCGAATGTATCTTTCTATTTGGATTATTGACATGTTAAAGAAGGTGAAGATGGTTTCATCTTTTGCTTGTGAAAGGCAACAGCTTGAAAAGTTGCAGTTTGGAAAAGGTAGAAAATATTCGGGAGGAAGCATCAAAGCTGCGAAGAAGTTTAAGGATATTAATAATGTCCAAGACGATAAGTTCCTTTCTCACATTTCATGGTGGAAAGAGATGGTGGAATCATGCAAGAAGCCGTCATCGGTTCAGCTGGTTAAGAGGCTTGACTTCTCCAATTTGCTCGGTTTAGATATTAACCTGAAAAATGGGAGTCTTAAAGAAGGAACTCTTAACTGGGAGATATTACAGTTTAAGGCTAAGTTTCCTCGAGAAGTTTTGCTTTGTAGAGTTGGAGATTTTTATGAAGCAATTGGAATAGATGCTTGCATACTTGTTGAATATGCTGGTTTGAATCCTTTTGGAGGTCAGCGTATGGATAGTATTCCAAAGGCTGGTTGCCCTGTTGTGAATCTTCGTCAAACTTTGGATGATCTGACTCGTAACGGGTTCTCAGTGTGCATAGTGGAAGAAGTTCAAGGACCAATGCAAGCTCGTTCTCGCAAAGGACGTTTTATATCTGGGCATGCACACCCGGGCAGTCCCTATGTCTTTGGGCTTGTTGGGGTTGATCATGATCTCGACTTTCCAGAACCAATGCCTGTGGTCGGTAGGAATATCACGATCTGCAAGAGGCTATTGCATAAGCCTTGTCATAGAGACCATGAAGACATATTCGTCAGAGGATGGTTTGACAGAGGAGGCCCTGGTTCTTGGTTGTTGATTTTTGGAAGAAGTATGCTTCTCAATCTGTGCCATTTAAAGAATATTTACCGTCGTTTTGATGCCATGCACAAGCTTATCACTTCACGAGCGGCTTCTTATAGACATTTTGAGTGGTTCGATGGAAATCCTCTTACTAATCTTTTGTCTAAGGTTAAAGAGCTTTATGGTCTTGATGATGAAGTTACATTTAGGAACGTTACGATATCATCCGAAAATAGGCCACATTCATTAACACTGGGAACTGCAACACAGATTGGTGCCATACCAACAGAGGGAATACCGTGTTTGTTGAAGGTGTTGCTTCCATCAAATTGTGCTGGCCTTCCTGCATTGCTTATGAGCAATGTCACATGTGCAATTCCAGACTTCACTTGCTTTCCGCCCGCCAAGCTCGTGAAGTTACTGGAAATGAGGGAAGCCAATCATATTGAGTTCTGTAGAATGAAGAACGTACTCGACGAAATATTACACATGCATAAAAATTGCGAGTTAAGCAATATCCTGAAATTGTTGATGGATCCTTCATCTGTGGCAACTGGGTTGAAAATTGACTATGAAACATTTGTCGACGAATGTGAATGGGCTTCCAGTAGAGTTGGCGAAATGATTTTTCTCGATAATGAAAGCGAAAGCGATCAGAAAATCAGTTCTTATTTTATCATTCCTAATGATTTTTTTGAGGATATGGAATCTTCTTGGAAAGGTCGTGTGAAAAGGATTCACATTGAAGAAGTGTGTACAGAAGTAGAAAGTGCAGCTGAAGCACTGTCTCTAGCAGTTACTGAAGATTTCGTCCCGATCATTTCAAGAATCAAGGCTACTACTGCGCCGCTAGGAGGTCCAAAGGGAGAAATATTGTATGCTCGGGATAATCAATCTGTCTGGTTCAAAGGAAGACGGTTTGCACCAGCTGTATGGGCTGGAAGCCCTGGAGAAGAAGAAATTAAACAATTGAAACCTGCTCTTGATTCAAAGGGTAAAAAGGTTGGGGACGAGTGGTACCAAGAGGCCAACACCAAAGCAAAAGCAAGAGTAGTGGATTTGCTGAGGCAACTTTCTTCTGAATTGCTTGCTAAAATGAACGTTCTAATATTTGCTTCCATGTTACTCATTATCGCCAAGGCGTTATTCGCTCATGTGAGTGAAGGGAGGAGGAGAAAATGGGTTTTTCCTACCCTTGCTGCACCCAGTGATAGGTCCAAGGGCAGGAAATCAATGGAGGGGAAAGTTGGGATGAAGCTGGTTGGACTATCTCCGTATTGGTTTGATGTGATAGAAGGGAATGCTGTGCAGAATAGTATTGAGATGGAATCATTGTTTCTTTTGACGGGTCCAAATGGGGGTGGGAAATCTAGCTTGCTTCGATCCATTTGTGCTGCTGCTTTGCTTGGAATATGTGGATTTATGGTGCCAGCAGAGTCTGCCCTGATTCCCCATTTTGATTCTATTATGCTTCATATGAAATCTTTTGATAGTCCTGCTGATGGGAAAAGTTCTTTTCAGGTGGAAATGTCAGAGATGAGATCCATCATGAGTAGAGCAACGGAAAGCAGCCTCGTACTTATAGATGAAATCTGTCGAGGAACAGAAACAGCAAAGGGCACTTGTATTGCAGGGAGCATTGTTGAAGCTCTTGATAAAGTTGGGTGCCTTGGCATCGTCTCCACTCACTTGCATGGTATATTCAATTTGCCTTTAGATATCAATAACACTGTGTTCAAAGCAATGGGTACTGTCTGTACCGATGGCCGAACGGTTCCCACTTGGAAGTTGATTAGTGGAATATGTAGAGAGAGCCTTGCCTTTGAAACAGCAAAGAACGAAGGAATCTCTGAAACTATAATTCAAAGGGCTCAAGATTTGTATCTCTCAAATTATGTTGAACAAGGAATTCCAGGAAAACAGAAGATGAATTTGTATCTCTCAAATTCTTCTCATGCAAAAACAGAGAGATCTAAGAAAAAAGTTTTTTCCTGGAAGGAAATTCAGAGTGCTATCACTGCAATATGCCAAAAGAAGATGATGGAGTTTCATAAGGATAAAAACACATTGAAACCTGTAGAAATCCAATGTGTTCTGATTGATGCTAGAGAGAAGCCACCTCCATCGACCGTCGGTGCTTCGAGTGTGTATGTGATTCTTAGACCAGATGGTAAATTCTACGTCGGACAGACTGATGATCTGGAGGGTCGAGTCCATTCGCATCGTTTAAAAGAAGGAATGCGGGATGCTGCATTTCTTTATTTTATAGTACCTGGGAAGAGCTTGGCGTGCCAGCTCGAAACACTTCTCATCAATCGACTTCCTGATCATGGGTTACAGCTAACTAATGTTGCTGATGGAAAGCACCGAAATTTCGGCACGTCCAATATCTTATCAGATAATGTGACTGTTTGTTCATAA 4302 43.63 MENSNGRYSYRLQRETERQREREIREGDMNRVEIQLKRGILVDNNGEPCSGIGSSGASNDENSVSKAKEVDKHQPDLSSEEFSSPVEAEPELGLGLSLGSGISTGKGKHGGWGERGRILTAKDFPSAISPGGSSSSSSFARFSGRAAAVSGVKRAAEPVAHHGDSPPPAVSQVVGWPPLRTYRINSLVNQAKNRKSGDEKELLRSNGVAEKIHDDKNMSATDTEKGPLGFVKVYMDGVLIGRKVDLNAHSCYGTLALMLEDMFFKPTGSAPSSGSSGDYDEKAPKPSKLLTGSSEFVLTYEDKEGDWLLVGDVPWKMFLDSVKKLRIMRTSEAKGIGKAGIRCIGRLSFTSAFLMFVNRVRMYLSIWIIDMLKKVKMVSSFACERQQLEKLQFGKGRKYSGGSIKAAKKFKDINNVQDDKFLSHISWWKEMVESCKKPSSVQLVKRLDFSNLLGLDINLKNGSLKEGTLNWEILQFKAKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGQRMDSIPKAGCPVVNLRQTLDDLTRNGFSVCIVEEVQGPMQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGRNITICKRLLHKPCHRDHEDIFVRGWFDRGGPGSWLLIFGRSMLLNLCHLKNIYRRFDAMHKLITSRAASYRHFEWFDGNPLTNLLSKVKELYGLDDEVTFRNVTISSENRPHSLTLGTATQIGAIPTEGIPCLLKVLLPSNCAGLPALLMSNVTCAIPDFTCFPPAKLVKLLEMREANHIEFCRMKNVLDEILHMHKNCELSNILKLLMDPSSVATGLKIDYETFVDECEWASSRVGEMIFLDNESESDQKISSYFIIPNDFFEDMESSWKGRVKRIHIEEVCTEVESAAEALSLAVTEDFVPIISRIKATTAPLGGPKGEILYARDNQSVWFKGRRFAPAVWAGSPGEEEIKQLKPALDSKGKKVGDEWYQEANTKAKARVVDLLRQLSSELLAKMNVLIFASMLLIIAKALFAHVSEGRRRKWVFPTLAAPSDRSKGRKSMEGKVGMKLVGLSPYWFDVIEGNAVQNSIEMESLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALIPHFDSIMLHMKSFDSPADGKSSFQVEMSEMRSIMSRATESSLVLIDEICRGTETAKGTCIAGSIVEALDKVGCLGIVSTHLHGIFNLPLDINNTVFKAMGTVCTDGRTVPTWKLISGICRESLAFETAKNEGISETIIQRAQDLYLSNYVEQGIPGKQKMNLYLSNSSHAKTERSKKKVFSWKEIQSAITAICQKKMMEFHKDKNTLKPVEIQCVLIDAREKPPPSTVGASSVYVILRPDGKFYVGQTDDLEGRVHSHRLKEGMRDAAFLYFIVPGKSLACQLETLLINRLPDHGLQLTNVADGKHRNFGTSNILSDNVTVCS 1433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13150410 13162062 + CmaCh14G018470.1 Cma14g01847 308830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01847 1433 Gene3D DNA repair protein MutS, domain I 463 569 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cma14g01847 1433 SMART mutATP5 1070 1256 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cma14g01847 1433 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
Cma14g01847 1433 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 664 1383 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cma14g01847 1433 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 664 1383 - -
Cma14g01847 1433 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 511 596 - -
Cma14g01847 1433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1061 1254 IPR027417 -
Cma14g01847 1433 MobiDBLite consensus disorder prediction 64 78 - -
Cma14g01847 1433 Pfam MutS domain V 1074 1254 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cma14g01847 1433 SUPERFAMILY CAD & PB1 domains 227 328 - -
Cma14g01847 1433 Pfam MutS domain I 474 563 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cma14g01847 1433 MobiDBLite consensus disorder prediction 48 63 - -
Cma14g01847 1433 CDD ABC_MutS_homologs 1060 1243 - -
Cma14g01847 1433 Pfam AUX/IAA family 148 337 IPR033389 -
Cma14g01847 1433 MobiDBLite consensus disorder prediction 1 90 - -
Cma14g01847 1433 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 511 596 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cma14g01847 1433 SUPERFAMILY GIY-YIG endonuclease 1341 1404 IPR035901 -
Cma14g01847 1433 SUPERFAMILY DNA repair protein MutS, domain I 462 572 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cma14g01847 1433 ProSitePatterns DNA mismatch repair proteins mutS family signature. 1151 1167 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cma14g01847 1433 Gene3D - 224 341 - -
Cma14g01847 1433 Gene3D - 1049 1324 IPR027417 -
Cma14g01847 1433 MobiDBLite consensus disorder prediction 11 33 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01847 - - - csv:101209091 1691.78
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma14g01847 Cma17g00132 CCT
Cma14g01847 Cma17g00132 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01335 Cma-Chr5:10098570 Cma14g01847 Cma-Chr14:13150410 1.82E-25 dispersed
Cma14g01847 Cma-Chr14:13150410 Cma05g00564 Cma-Chr5:2772489 2.43E-31 dispersed
Cma18g00364 Cma-Chr18:1985815 Cma14g01847 Cma-Chr14:13150410 1.69E-15 dispersed
Cma16g00003 Cma-Chr16:22726 Cma14g01847 Cma-Chr14:13150410 2.60E-15 transposed
Cma14g01847 Cma-Chr14:13150410 Cma17g00132 Cma-Chr17:688600 2.56E-75 wgd
Cma14g01847 Cma-Chr14:13150410 Cma19g00116 Cma-Chr19:690374 6.19E-52 wgd
Cma14g01847 Cma-Chr14:13150410 Cma02g01718 Cma-Chr2:9677191 3.47E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g788 Blo01g00304 . . Bda08g00002 . Bpe14g01286 . Bma05g01256 . Cmo17g00135 . Cma14g01847 . Car14g01655 . . Cpe03g01547 . . . . . . . Cla06g00701 Cam06g0752 Cec06g0758 Cco06g0770 Clacu06g0743 Cmu06g0726 Cre06g1503 Cone14ag0184 Cone15ag0193 . . Lsi05g01777 Csa02g01024 Chy05g00286 Cme06g00445 . . . Bda13g00034 . . Bma02g00747 . . . Cmo14g01891 . Cma17g00132 . Car17g00118 Cpe12g00116 . . . . . . . . Cla05g00403 Cam05g0439 Cec05g0447 Cco05g0447 Clacu05g0436 Cmu05g0415 Cre05g0477 Lsi09g01192 Csa03g01162 Chy06g00425 Cme05g00622
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36331 PF02309 AUX_IAA 2.40E-55 CL0072 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01847 Cma_Chr14 FPKM 10.457081 11.406488 2.437946 2.758607 8.608205 7.083252 8.725339 2.681833 2.192293 2.357405